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Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts.
Yocca AE, Platts A, Alger E, Teresi S, Mengist MF, Benevenuto J, Ferrão LFV, Jacobs M, Babinski M, Magallanes-Lundback M, Bayer P, Golicz A, Humann JL, Main D, Espley RV, Chagné D, Albert NW, Montanari S, Vorsa N, Polashock J, Díaz-Garcia L, Zalapa J, Bassil NV, Munoz PR, Iorizzo M, Edger PP. Yocca AE, et al. Among authors: bayer p. bioRxiv [Preprint]. 2023 Aug 2:2023.07.31.551392. doi: 10.1101/2023.07.31.551392. bioRxiv. 2023. Update in: Hortic Res. 2023 Oct 10;10(11):uhad202. doi: 10.1093/hr/uhad202 PMID: 37577683 Free PMC article. Updated. Preprint.
Skim-based genotyping by sequencing.
Golicz AA, Bayer PE, Edwards D. Golicz AA, et al. Methods Mol Biol. 2015;1245:257-70. doi: 10.1007/978-1-4939-1966-6_19. Methods Mol Biol. 2015. PMID: 25373763
The pangenome of an agronomically important crop plant Brassica oleracea.
Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D. Golicz AA, et al. Among authors: bayer pe. Nat Commun. 2016 Nov 11;7:13390. doi: 10.1038/ncomms13390. Nat Commun. 2016. PMID: 27834372 Free PMC article.
The pangenome of hexaploid bread wheat.
Montenegro JD, Golicz AA, Bayer PE, Hurgobin B, Lee H, Chan CK, Visendi P, Lai K, Doležel J, Batley J, Edwards D. Montenegro JD, et al. Among authors: bayer pe. Plant J. 2017 Jun;90(5):1007-1013. doi: 10.1111/tpj.13515. Epub 2017 Apr 5. Plant J. 2017. PMID: 28231383 Free article.
Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.
Hurgobin B, Golicz AA, Bayer PE, Chan CK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D. Hurgobin B, et al. Among authors: bayer pe. Plant Biotechnol J. 2018 Jul;16(7):1265-1274. doi: 10.1111/pbi.12867. Epub 2018 Jan 10. Plant Biotechnol J. 2018. PMID: 29205771 Free PMC article.
403 results