Hamada M - Search Results

1

Neat1 lncRNA organizes the inflammatory gene expressions in the dorsal root ganglion in neuropathic pain caused by nerve injury.

Maruyama M, Sakai A, Fukunaga T, Miyagawa Y, Okada T, Hamada M, Suzuki H. Maruyama M, et al. Among authors: hamada m. Front Immunol. 2023 Aug 8;14:1185322. doi: 10.3389/fimmu.2023.1185322. eCollection 2023. Front Immunol. 2023. PMID: 37614230 Free PMC article.

2

Rtools: a web server for various secondary structural analyses on single RNA sequences.

Hamada M, Ono Y, Kiryu H, Sato K, Kato Y, Fukunaga T, Mori R, Asai K. Hamada M, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W302-7. doi: 10.1093/nar/gkw337. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131356 Free PMC article.

3

RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach.

Fukunaga T, Hamada M. Fukunaga T, et al. Among authors: hamada m. Bioinformatics. 2017 Sep 1;33(17):2666-2674. doi: 10.1093/bioinformatics/btx287. Bioinformatics. 2017. PMID: 28459942 Free PMC article.

4

Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data.

Zeng C, Fukunaga T, Hamada M. Zeng C, et al. Among authors: hamada m. BMC Genomics. 2018 May 29;19(1):414. doi: 10.1186/s12864-018-4765-z. BMC Genomics. 2018. PMID: 29843593 Free PMC article.

5

A Novel Method for Assessing the Statistical Significance of RNA-RNA Interactions Between Two Long RNAs.

Fukunaga T, Hamada M. Fukunaga T, et al. Among authors: hamada m. J Comput Biol. 2018 Sep;25(9):976-986. doi: 10.1089/cmb.2017.0260. Epub 2018 Jul 2. J Comput Biol. 2018. PMID: 29963900

6

Computational approaches for alternative and transient secondary structures of ribonucleic acids.

Fukunaga T, Hamada M. Fukunaga T, et al. Among authors: hamada m. Brief Funct Genomics. 2018 Jun 20;18(3):182-191. doi: 10.1093/bfgp/ely042. Brief Funct Genomics. 2018. PMID: 30689706 Review.

7

Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference.

Matsutani T, Ueno Y, Fukunaga T, Hamada M. Matsutani T, et al. Among authors: hamada m. Bioinformatics. 2019 Nov 1;35(22):4543-4552. doi: 10.1093/bioinformatics/btz266. Bioinformatics. 2019. PMID: 30993319 Free PMC article.

8

LncRRIsearch: A Web Server for lncRNA-RNA Interaction Prediction Integrated With Tissue-Specific Expression and Subcellular Localization Data.

Fukunaga T, Iwakiri J, Ono Y, Hamada M. Fukunaga T, et al. Among authors: hamada m. Front Genet. 2019 May 28;10:462. doi: 10.3389/fgene.2019.00462. eCollection 2019. Front Genet. 2019. PMID: 31191601 Free PMC article.

9

Targeting the TR4 nuclear receptor-mediated lncTASR/AXL signaling with tretinoin increases the sunitinib sensitivity to better suppress the RCC progression.

Shi H, Sun Y, He M, Yang X, Hamada M, Fukunaga T, Zhang X, Chang C. Shi H, et al. Among authors: hamada m. Oncogene. 2020 Jan;39(3):530-545. doi: 10.1038/s41388-019-0962-8. Epub 2019 Sep 9. Oncogene. 2020. PMID: 31501521 Free PMC article.

10

Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation.

Hosoda S, Nishijima S, Fukunaga T, Hattori M, Hamada M. Hosoda S, et al. Among authors: hamada m. Microbiome. 2020 Jun 23;8(1):95. doi: 10.1186/s40168-020-00864-3. Microbiome. 2020. PMID: 32576288 Free PMC article.

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