Chojnowski G - Search Results

1

RNA 3D structure modeling by fragment assembly with small-angle X-ray scattering restraints.

Chojnowski G, Zaborowski R, Magnus M, Mukherjee S, Bujnicki JM. Chojnowski G, et al. Bioinformatics. 2023 Sep 2;39(9):btad527. doi: 10.1093/bioinformatics/btad527. Bioinformatics. 2023. PMID: 37647627 Free PMC article.

2

RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes.

Chojnowski G, Bujnicki JM, Bochtler M. Chojnowski G, et al. Bioinformatics. 2012 Mar 15;28(6):880-1. doi: 10.1093/bioinformatics/bts003. Epub 2012 Jan 11. Bioinformatics. 2012. PMID: 22238259 Free PMC article.

3

Computational modeling of protein-RNA complex structures.

Tuszynska I, Matelska D, Magnus M, Chojnowski G, Kasprzak JM, Kozlowski LP, Dunin-Horkawicz S, Bujnicki JM. Tuszynska I, et al. Among authors: chojnowski g. Methods. 2014 Feb;65(3):310-9. doi: 10.1016/j.ymeth.2013.09.014. Epub 2013 Sep 29. Methods. 2014. PMID: 24083976 Review.

4

RNA Bricks--a database of RNA 3D motifs and their interactions.

Chojnowski G, Walen T, Bujnicki JM. Chojnowski G, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D123-31. doi: 10.1093/nar/gkt1084. Epub 2013 Nov 12. Nucleic Acids Res. 2014. PMID: 24220091 Free PMC article.

5

Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR.

Dzananovic E, Patel TR, Chojnowski G, Boniecki MJ, Deo S, McEleney K, Harding SE, Bujnicki JM, McKenna SA. Dzananovic E, et al. Among authors: chojnowski g. J Struct Biol. 2014 Jan;185(1):48-57. doi: 10.1016/j.jsb.2013.11.007. Epub 2013 Nov 28. J Struct Biol. 2014. PMID: 24291322

6

Computational modeling of RNA 3D structures, with the aid of experimental restraints.

Magnus M, Matelska D, Lach G, Chojnowski G, Boniecki MJ, Purta E, Dawson W, Dunin-Horkawicz S, Bujnicki JM. Magnus M, et al. Among authors: chojnowski g. RNA Biol. 2014;11(5):522-36. doi: 10.4161/rna.28826. Epub 2014 Apr 23. RNA Biol. 2014. PMID: 24785264 Free PMC article. Review.

7

ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes.

Waleń T, Chojnowski G, Gierski P, Bujnicki JM. Waleń T, et al. Among authors: chojnowski g. Nucleic Acids Res. 2014 Oct 29;42(19):e151. doi: 10.1093/nar/gku765. Epub 2014 Aug 26. Nucleic Acids Res. 2014. PMID: 25159614 Free PMC article.

8

Sequence-specific cleavage of dsRNA by Mini-III RNase.

Głów D, Pianka D, Sulej AA, Kozłowski ŁP, Czarnecka J, Chojnowski G, Skowronek KJ, Bujnicki JM. Głów D, et al. Among authors: chojnowski g. Nucleic Acids Res. 2015 Mar 11;43(5):2864-73. doi: 10.1093/nar/gkv009. Epub 2015 Jan 29. Nucleic Acids Res. 2015. PMID: 25634891 Free PMC article.

9

Brickworx builds recurrent RNA and DNA structural motifs into medium- and low-resolution electron-density maps.

Chojnowski G, Waleń T, Piątkowski P, Potrzebowski W, Bujnicki JM. Chojnowski G, et al. Acta Crystallogr D Biol Crystallogr. 2015 Mar;71(Pt 3):697-705. doi: 10.1107/S1399004715000383. Epub 2015 Feb 26. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 25760616 Free PMC article.

10

Characterization of the termini of the West Nile virus genome and their interactions with the small isoform of the 2' 5'-oligoadenylate synthetase family.

Deo S, Patel TR, Chojnowski G, Koul A, Dzananovic E, McEleney K, Bujnicki JM, McKenna SA. Deo S, et al. Among authors: chojnowski g. J Struct Biol. 2015 May;190(2):236-49. doi: 10.1016/j.jsb.2015.04.005. Epub 2015 Apr 11. J Struct Biol. 2015. PMID: 25871524

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