Shi L - Search Results

1

Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials.

Zheng Y, Liu Y, Yang J, Dong L, Zhang R, Tian S, Yu Y, Ren L, Hou W, Zhu F, Mai Y, Han J, Zhang L, Jiang H, Lin L, Lou J, Li R, Lin J, Liu H, Kong Z, Wang D, Dai F, Bao D, Cao Z, Chen Q, Chen Q, Chen X, Gao Y, Jiang H, Li B, Li B, Li J, Liu R, Qing T, Shang E, Shang J, Sun S, Wang H, Wang X, Zhang N, Zhang P, Zhang R, Zhu S, Scherer A, Wang J, Wang J, Huo Y, Liu G, Cao C, Shao L, Xu J, Hong H, Xiao W, Liang X, Lu D, Jin L, Tong W, Ding C, Li J, Fang X, Shi L. Zheng Y, et al. Among authors: shi l. Nat Biotechnol. 2024 Jul;42(7):1133-1149. doi: 10.1038/s41587-023-01934-1. Epub 2023 Sep 7. Nat Biotechnol. 2024. PMID: 37679543 Free PMC article.

2

Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.

Hong H, Tong W, Fang H, Shi L, Xie Q, Wu J, Perkins R, Walker JD, Branham W, Sheehan DM. Hong H, et al. Among authors: shi l. Environ Health Perspect. 2002 Jan;110(1):29-36. doi: 10.1289/ehp.0211029. Environ Health Perspect. 2002. PMID: 11781162 Free PMC article.

3

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.

Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Shi L, Casciano D. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2003 Nov;111(15):1819-26. doi: 10.1289/ehp.6497. Environ Health Perspect. 2003. PMID: 14630514 Free PMC article. Review.

4

Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2004 Aug;112(12):1249-54. doi: 10.1289/txg.7125. Environ Health Perspect. 2004. PMID: 15345371 Free PMC article.

5

Multiclass Decision Forest--a novel pattern recognition method for multiclass classification in microarray data analysis.

Hong H, Tong W, Perkins R, Fang H, Xie Q, Shi L. Hong H, et al. Among authors: shi l. DNA Cell Biol. 2004 Oct;23(10):685-94. doi: 10.1089/dna.2004.23.685. DNA Cell Biol. 2004. PMID: 15585126

6

Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data.

Tan Y, Shi L, Tong W, Wang C. Tan Y, et al. Among authors: shi l. Nucleic Acids Res. 2005 Jan 7;33(1):56-65. doi: 10.1093/nar/gki144. Print 2005. Nucleic Acids Res. 2005. PMID: 15640445 Free PMC article.

7

Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).

Hong H, Dragan Y, Epstein J, Teitel C, Chen B, Xie Q, Fang H, Shi L, Perkins R, Tong W. Hong H, et al. Among authors: shi l. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S5. doi: 10.1186/1471-2105-6-S2-S5. BMC Bioinformatics. 2005. PMID: 16026602 Free PMC article.

8

Evaluation of external RNA controls for the assessment of microarray performance.

Tong W, Lucas AB, Shippy R, Fan X, Fang H, Hong H, Orr MS, Chu TM, Guo X, Collins PJ, Sun YA, Wang SJ, Bao W, Wolfinger RD, Shchegrova S, Guo L, Warrington JA, Shi L. Tong W, et al. Among authors: shi l. Nat Biotechnol. 2006 Sep;24(9):1132-9. doi: 10.1038/nbt1237. Nat Biotechnol. 2006. PMID: 16964227

9

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.

Patterson TA, Lobenhofer EK, Fulmer-Smentek SB, Collins PJ, Chu TM, Bao W, Fang H, Kawasaki ES, Hager J, Tikhonova IR, Walker SJ, Zhang L, Hurban P, de Longueville F, Fuscoe JC, Tong W, Shi L, Wolfinger RD. Patterson TA, et al. Among authors: shi l. Nat Biotechnol. 2006 Sep;24(9):1140-50. doi: 10.1038/nbt1242. Nat Biotechnol. 2006. PMID: 16964228

10

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.

MAQC Consortium; Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, Luo Y, Sun YA, Willey JC, Setterquist RA, Fischer GM, Tong W, Dragan YP, Dix DJ, Frueh FW, Goodsaid FM, Herman D, Jensen RV, Johnson CD, Lobenhofer EK, Puri RK, Schrf U, Thierry-Mieg J, Wang C, Wilson M, Wolber PK, Zhang L, Amur S, Bao W, Barbacioru CC, Lucas AB, Bertholet V, Boysen C, Bromley B, Brown D, Brunner A, Canales R, Cao XM, Cebula TA, Chen JJ, Cheng J, Chu TM, Chudin E, Corson J, Corton JC, Croner LJ, Davies C, Davison TS, Delenstarr G, Deng X, Dorris D, Eklund AC, Fan XH, Fang H, Fulmer-Smentek S, Fuscoe JC, Gallagher K, Ge W, Guo L, Guo X, Hager J, Haje PK, Han J, Han T, Harbottle HC, Harris SC, Hatchwell E, Hauser CA, Hester S, Hong H, Hurban P, Jackson SA, Ji H, Knight CR, Kuo WP, LeClerc JE, Levy S, Li QZ, Liu C, Liu Y, Lombardi MJ, Ma Y, Magnuson SR, Maqsodi B, McDaniel T, Mei N, Myklebost O, Ning B, Novoradovskaya N, Orr MS, Osborn TW, Papallo A, Patterson TA, Perkins RG, Peters EH, Peterson R, Philips KL, Pine PS, Pusztai L, Qian F, Ren H, Rosen M, Rosenzweig BA, Samaha RR, Schena M, Schroth GP, Shchegrova S, Smith DD, Staedtler… See abstract for full author list ➔ MAQC Consortium, et al. Among authors: shi l. Nat Biotechnol. 2006 Sep;24(9):1151-61. doi: 10.1038/nbt1239. Nat Biotechnol. 2006. PMID: 16964229 Free PMC article.

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