Lucks JB - Search Results

1

At-Home, Cell-Free Synthetic Biology Education Modules for Transcriptional Regulation and Environmental Water Quality Monitoring.

Jung JK, Rasor BJ, Rybnicky GA, Silverman AD, Standeven J, Kuhn R, Granito T, Ekas HM, Wang BM, Karim AS, Lucks JB, Jewett MC. Jung JK, et al. Among authors: lucks jb. ACS Synth Biol. 2023 Oct 20;12(10):2909-2921. doi: 10.1021/acssynbio.3c00223. Epub 2023 Sep 12. ACS Synth Biol. 2023. PMID: 37699423 Free PMC article.

2

SHAPE-Seq: High-Throughput RNA Structure Analysis.

Mortimer SA, Trapnell C, Aviran S, Pachter L, Lucks JB. Mortimer SA, et al. Among authors: lucks jb. Curr Protoc Chem Biol. 2012 Dec 1;4(4):275-97. doi: 10.1002/9780470559277.ch120019. Curr Protoc Chem Biol. 2012. PMID: 23788555

3

Why on earth?: Evaluating hypotheses about the physiological functions of human geophagy.

Young SL, Sherman PW, Lucks JB, Pelto GH. Young SL, et al. Among authors: lucks jb. Q Rev Biol. 2011 Jun;86(2):97-120. doi: 10.1086/659884. Q Rev Biol. 2011. PMID: 21800636 Review.

4

SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.

Loughrey D, Watters KE, Settle AH, Lucks JB. Loughrey D, et al. Among authors: lucks jb. Nucleic Acids Res. 2014 Dec 1;42(21):e165. doi: 10.1093/nar/gku909. Epub 2014 Oct 10. Nucleic Acids Res. 2014. PMID: 25303992 Free PMC article.

5

Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).

Watters KE, Yu AM, Strobel EJ, Settle AH, Lucks JB. Watters KE, et al. Among authors: lucks jb. Methods. 2016 Jul 1;103:34-48. doi: 10.1016/j.ymeth.2016.04.002. Epub 2016 Apr 12. Methods. 2016. PMID: 27064082 Free PMC article.

6

An RNA Mapping DataBase for curating RNA structure mapping experiments.

Cordero P, Lucks JB, Das R. Cordero P, et al. Among authors: lucks jb. Bioinformatics. 2012 Nov 15;28(22):3006-8. doi: 10.1093/bioinformatics/bts554. Epub 2012 Sep 12. Bioinformatics. 2012. PMID: 22976082 Free PMC article.

7

RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs.

Strobel EJ, Watters KE, Loughrey D, Lucks JB. Strobel EJ, et al. Among authors: lucks jb. Curr Opin Biotechnol. 2016 Jun;39:182-191. doi: 10.1016/j.copbio.2016.03.019. Epub 2016 Apr 30. Curr Opin Biotechnol. 2016. PMID: 27132125 Free PMC article. Review.

8

Genome landscapes and bacteriophage codon usage.

Lucks JB, Nelson DR, Kudla GR, Plotkin JB. Lucks JB, et al. PLoS Comput Biol. 2008 Feb 29;4(2):e1000001. doi: 10.1371/journal.pcbi.1000001. PLoS Comput Biol. 2008. PMID: 18463708 Free PMC article.

9

Pause point spectra in DNA constant-force unzipping.

Weeks JD, Lucks JB, Kafri Y, Danilowicz C, Nelson DR, Prentiss M. Weeks JD, et al. Among authors: lucks jb. Biophys J. 2005 Apr;88(4):2752-65. doi: 10.1529/biophysj.104.047340. Epub 2005 Feb 4. Biophys J. 2005. PMID: 15695634 Free PMC article.

10

Rationally designed families of orthogonal RNA regulators of translation.

Mutalik VK, Qi L, Guimaraes JC, Lucks JB, Arkin AP. Mutalik VK, et al. Among authors: lucks jb. Nat Chem Biol. 2012 Mar 25;8(5):447-54. doi: 10.1038/nchembio.919. Nat Chem Biol. 2012. PMID: 22446835

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