Marsico A - Search Results

1

SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9.

Schmidt N, Ganskih S, Wei Y, Gabel A, Zielinski S, Keshishian H, Lareau CA, Zimmermann L, Makroczyova J, Pearce C, Krey K, Hennig T, Stegmaier S, Moyon L, Horlacher M, Werner S, Aydin J, Olguin-Nava M, Potabattula R, Kibe A, Dölken L, Smyth RP, Caliskan N, Marsico A, Krempl C, Bodem J, Pichlmair A, Carr SA, Chlanda P, Erhard F, Munschauer M. Schmidt N, et al. Among authors: marsico a. Cell. 2023 Oct 26;186(22):4834-4850.e23. doi: 10.1016/j.cell.2023.09.002. Epub 2023 Oct 3. Cell. 2023. PMID: 37794589 Free PMC article.

2

A systematic benchmark of machine learning methods for protein-RNA interaction prediction.

Horlacher M, Cantini G, Hesse J, Schinke P, Goedert N, Londhe S, Moyon L, Marsico A. Horlacher M, et al. Among authors: marsico a. Brief Bioinform. 2023 Sep 20;24(5):bbad307. doi: 10.1093/bib/bbad307. Brief Bioinform. 2023. PMID: 37635383 Free PMC article.

3

A computational map of the human-SARS-CoV-2 protein-RNA interactome predicted at single-nucleotide resolution.

Horlacher M, Oleshko S, Hu Y, Ghanbari M, Cantini G, Schinke P, Vergara EE, Bittner F, Mueller NS, Ohler U, Moyon L, Marsico A. Horlacher M, et al. Among authors: marsico a. NAR Genom Bioinform. 2023 Feb 20;5(1):lqad010. doi: 10.1093/nargab/lqad010. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36814457 Free PMC article.

4

Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility.

Salvatore M, Horlacher M, Marsico A, Winther O, Andersson R. Salvatore M, et al. Among authors: marsico a. NAR Genom Bioinform. 2023 Mar 29;5(2):lqad026. doi: 10.1093/nargab/lqad026. eCollection 2023 Jun. NAR Genom Bioinform. 2023. PMID: 37007588 Free PMC article.

5

Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning.

Horlacher M, Wagner N, Moyon L, Kuret K, Goedert N, Salvatore M, Ule J, Gagneur J, Winther O, Marsico A. Horlacher M, et al. Among authors: marsico a. Genome Biol. 2023 Aug 4;24(1):180. doi: 10.1186/s13059-023-03015-7. Genome Biol. 2023. PMID: 37542318 Free PMC article.

6

Screening for eukaryotic motifs in Legionella pneumophila reveals Smh1 as bacterial deacetylase of host histones.

Herbel SM, Moyon L, Christ M, Elsayed EM, Caffrey BE, Malmsheimer S, Grin I, Hoffmann K, Surmann K, Blankenburg S, Jung AL, Herkt CE, Borsò M, Bozdag B, Imhof A, Becker A, Wagner S, Bange G, Völker U, Bertrams W, Marsico A, Schmeck B. Herbel SM, et al. Among authors: marsico a. Virulence. 2022 Dec;13(1):2042-2058. doi: 10.1080/21505594.2022.2149973. Virulence. 2022. PMID: 36411449 Free PMC article.

7

A Data-Mining Approach to Identify NF-kB-Responsive microRNAs in Tissues Involved in Inflammatory Processes: Potential Relevance in Age-Related Diseases.

Micolucci L, Matacchione G, Albertini MC, Marra M, Ramini D, Giuliani A, Sabbatinelli J, Procopio AD, Olivieri F, Marsico A, Monsurrò V. Micolucci L, et al. Among authors: marsico a. Int J Mol Sci. 2023 Mar 7;24(6):5123. doi: 10.3390/ijms24065123. Int J Mol Sci. 2023. PMID: 36982191 Free PMC article.

8

BioPathNet: Enhancing Link Prediction in Biomedical Knowledge Graphs through Path Representation Learning.

Hu Y, Oleshko S, Firmani S, Zhu Z, Cheng H, Ulmer M, Arnold M, Colomé-Tatché M, Tang J, Xhonneux S, Marsico A. Hu Y, et al. Among authors: marsico a. Res Sq [Preprint]. 2024 Sep 18:rs.3.rs-5057842. doi: 10.21203/rs.3.rs-5057842/v1. Res Sq. 2024. PMID: 39372928 Free PMC article. Preprint.

9

Path-based reasoning for biomedical knowledge graphs with BioPathNet.

Hu Y, Oleshko S, Firmani S, Zhu Z, Cheng H, Ulmer M, Arnold M, Colomé-Tatché M, Tang J, Xhonneux S, Marsico A. Hu Y, et al. Among authors: marsico a. bioRxiv [Preprint]. 2024 Aug 10:2024.06.17.599219. doi: 10.1101/2024.06.17.599219. bioRxiv. 2024. PMID: 39149355 Free PMC article. Preprint.

10

Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy.

Iyer DP, Moyon L, Wittler L, Cheng CY, Ringeling FR, Canzar S, Marsico A, Bulut-Karslioğlu A. Iyer DP, et al. Among authors: marsico a. Genome Res. 2024 May 15;34(4):572-589. doi: 10.1101/gr.278662.123. Genome Res. 2024. PMID: 38719471 Free PMC article.

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