Kaestner KH - Search Results

1

Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data.

Lee MYY, Kaestner KH, Li M. Lee MYY, et al. Among authors: kaestner kh. Genome Biol. 2023 Oct 24;24(1):244. doi: 10.1186/s13059-023-03073-x. Genome Biol. 2023. PMID: 37875977 Free PMC article.

2

Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data.

Lee MYY, Kaestner KH, Li M. Lee MYY, et al. Among authors: kaestner kh. bioRxiv [Preprint]. 2023 Feb 3:2023.02.01.526609. doi: 10.1101/2023.02.01.526609. bioRxiv. 2023. Update in: Genome Biol. 2023 Oct 24;24(1):244. doi: 10.1186/s13059-023-03073-x PMID: 36778447 Free PMC article. Updated. Preprint.

3

[No title available]

[No authors listed] [No authors listed] PMID: 39058906

4

No Evidence for Persistent Enteroviral B Infection of Pancreatic Islets in Patients With Type 1 Diabetes and Prediabetes From RNA Sequencing Data.

Manduchi E, Descamps HC, Schug J, Da T, Lahori D, El-Mekkoussi H, Betts MR, Kaestner KH. Manduchi E, et al. Among authors: kaestner kh. Diabetes. 2024 Oct 1;73(10):1697-1704. doi: 10.2337/db24-0076. Diabetes. 2024. PMID: 39083653

5

Modeling type 1 diabetes progression using machine learning and single-cell transcriptomic measurements in human islets.

Patil AR, Schug J, Liu C, Lahori D, Descamps HC; Human Pancreas Analysis Consortium; Naji A, Kaestner KH, Faryabi RB, Vahedi G. Patil AR, et al. Among authors: kaestner kh. Cell Rep Med. 2024 May 21;5(5):101535. doi: 10.1016/j.xcrm.2024.101535. Epub 2024 Apr 26. Cell Rep Med. 2024. PMID: 38677282 Free PMC article.

6

H3K27me3 Demethylases Maintain the Transcriptional and Epigenomic Landscape of the Intestinal Epithelium.

Kolev HM, Swisa A, Manduchi E, Lan Y, Stine RR, Testa G, Kaestner KH. Kolev HM, et al. Among authors: kaestner kh. Cell Mol Gastroenterol Hepatol. 2023;15(4):821-839. doi: 10.1016/j.jcmgh.2022.12.001. Epub 2022 Dec 9. Cell Mol Gastroenterol Hepatol. 2023. PMID: 36503150 Free PMC article.

7

All Good Things Come to an End: 5 Years at the Helm of CMGH.

Kaestner KH, Pack M. Kaestner KH, et al. Cell Mol Gastroenterol Hepatol. 2024;17(6):1063. doi: 10.1016/j.jcmgh.2024.03.015. Epub 2024 Apr 15. Cell Mol Gastroenterol Hepatol. 2024. PMID: 38636550 Free PMC article. No abstract available.

8

Mammalian Intestinal Development and Differentiation-The State of the Art.

Kolev HM, Kaestner KH. Kolev HM, et al. Among authors: kaestner kh. Cell Mol Gastroenterol Hepatol. 2023;16(5):809-821. doi: 10.1016/j.jcmgh.2023.07.011. Epub 2023 Jul 26. Cell Mol Gastroenterol Hepatol. 2023. PMID: 37507088 Free PMC article. Review.

9

The evolutionarily ancient FOXA transcription factors shape the murine gut microbiome via control of epithelial glycosylation.

Swisa A, Kieckhaefer J, Daniel SG, El-Mekkoussi H, Kolev HM, Tigue M, Jin C, Assenmacher CA, Dohnalová L, Thaiss CA, Karlsson NG, Bittinger K, Kaestner KH. Swisa A, et al. Among authors: kaestner kh. Dev Cell. 2024 Aug 19;59(16):2069-2084.e8. doi: 10.1016/j.devcel.2024.05.006. Epub 2024 May 30. Dev Cell. 2024. PMID: 38821056

10

AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics.

Mongia A, Saunders DC, Wang YJ, Brissova M, Powers AC, Kaestner KH, Vahedi G, Naji A, Schwartz GW, Faryabi RB. Mongia A, et al. Among authors: kaestner kh. bioRxiv [Preprint]. 2023 Jan 18:2023.01.15.524135. doi: 10.1101/2023.01.15.524135. bioRxiv. 2023. Update in: Nat Commun. 2024 May 3;15(1):3744. doi: 10.1038/s41467-024-47334-0 PMID: 36712052 Free PMC article. Updated. Preprint.

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