Wang K - Search Results

1

Assessing the Expression of Long INterspersed Elements (LINEs) via Long-Read Sequencing in Diverse Human Tissues and Cell Lines.

Rybacki K, Xia M, Ahsan MU, Xing J, Wang K. Rybacki K, et al. Among authors: wang k. Genes (Basel). 2023 Sep 29;14(10):1893. doi: 10.3390/genes14101893. Genes (Basel). 2023. PMID: 37895242 Free PMC article.

2

A survey of algorithms for the detection of genomic structural variants from long-read sequencing data.

Ahsan MU, Liu Q, Perdomo JE, Fang L, Wang K. Ahsan MU, et al. Among authors: wang k. Nat Methods. 2023 Aug;20(8):1143-1158. doi: 10.1038/s41592-023-01932-w. Epub 2023 Jun 29. Nat Methods. 2023. PMID: 37386186 Free PMC article. Review.

3

Classification of integers based on residue classes via modern deep learning algorithms.

Wu D, Yang J, Ahsan MU, Wang K. Wu D, et al. Among authors: wang k. Patterns (N Y). 2023 Oct 12;4(12):100860. doi: 10.1016/j.patter.2023.100860. eCollection 2023 Dec 8. Patterns (N Y). 2023. PMID: 38106613 Free PMC article.

4

A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing.

Ahsan MU, Gouru A, Chan J, Zhou W, Wang K. Ahsan MU, et al. Among authors: wang k. Nat Commun. 2024 Feb 16;15(1):1448. doi: 10.1038/s41467-024-45778-y. Nat Commun. 2024. PMID: 38365920 Free PMC article.

5

DELongSeq for efficient detection of differential isoform expression from long-read RNA-seq data.

Hu Y, Gouru A, Wang K. Hu Y, et al. Among authors: wang k. NAR Genom Bioinform. 2023 Mar 3;5(1):lqad019. doi: 10.1093/nargab/lqad019. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36879902 Free PMC article.

6

PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants.

Xu Z, Li Q, Marchionni L, Wang K. Xu Z, et al. Among authors: wang k. Nat Commun. 2023 Nov 28;14(1):7805. doi: 10.1038/s41467-023-43651-y. Nat Commun. 2023. PMID: 38016949 Free PMC article.

7

Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis.

Caetano da Silva C, Macias Trevino C, Mitchell J, Murali H, Tsimbal C, Dalessandro E, Carroll SH, Kochhar S, Curtis SW, Cheng CHE, Wang F, Kutschera E, Carstens RP, Xing Y, Wang K, Leslie EJ, Liao EC. Caetano da Silva C, et al. Among authors: wang f, wang k. Commun Biol. 2024 Aug 23;7(1):1040. doi: 10.1038/s42003-024-06715-3. Commun Biol. 2024. PMID: 39179789 Free PMC article.

8

Expanding the phenotypic spectrum of NAA10-related neurodevelopmental syndrome and NAA15-related neurodevelopmental syndrome.

Lyon GJ, Vedaie M, Beisheim T, Park A, Marchi E, Gottlieb L, Hsieh TC, Klinkhammer H, Sandomirsky K, Cheng H, Starr LJ, Preddy I, Tseng M, Li Q, Hu Y, Wang K, Carvalho A, Martinez F, Caro-Llopis A, Gavin M, Amble K, Krawitz P, Marmorstein R, Herr-Israel E. Lyon GJ, et al. Among authors: wang k. Eur J Hum Genet. 2023 Jul;31(7):824-833. doi: 10.1038/s41431-023-01368-y. Epub 2023 May 2. Eur J Hum Genet. 2023. PMID: 37130971 Free PMC article.

9

Termviewer - A Web Application for Streamlined Human Phenotype Ontology (HPO) Tagging and Document Annotation.

Nixon A, Fang L, Havrilla JM, Wang K. Nixon A, et al. Among authors: wang k. Chem Biodivers. 2022 Dec;19(12):e202200805. doi: 10.1002/cbdv.202200805. Epub 2022 Nov 3. Chem Biodivers. 2022. PMID: 36328766

10

Model performance and interpretability of semi-supervised generative adversarial networks to predict oncogenic variants with unlabeled data.

Ren Z, Li Q, Cao K, Li MM, Zhou Y, Wang K. Ren Z, et al. Among authors: wang k. BMC Bioinformatics. 2023 Feb 9;24(1):43. doi: 10.1186/s12859-023-05141-2. BMC Bioinformatics. 2023. PMID: 36759776 Free PMC article. Review.

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