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Evaluation of input data modality choices on functional gene embeddings.
Brechtmann F, Bechtler T, Londhe S, Mertes C, Gagneur J. Brechtmann F, et al. Among authors: gagneur j. NAR Genom Bioinform. 2023 Nov 2;5(4):lqad095. doi: 10.1093/nargab/lqad095. eCollection 2023 Dec. NAR Genom Bioinform. 2023. PMID: 37942285 Free PMC article.
A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway.
Bouwmeester T, Bauch A, Ruffner H, Angrand PO, Bergamini G, Croughton K, Cruciat C, Eberhard D, Gagneur J, Ghidelli S, Hopf C, Huhse B, Mangano R, Michon AM, Schirle M, Schlegl J, Schwab M, Stein MA, Bauer A, Casari G, Drewes G, Gavin AC, Jackson DB, Joberty G, Neubauer G, Rick J, Kuster B, Superti-Furga G. Bouwmeester T, et al. Among authors: gagneur j. Nat Cell Biol. 2004 Feb;6(2):97-105. doi: 10.1038/ncb1086. Epub 2004 Jan 25. Nat Cell Biol. 2004. PMID: 14743216
An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae.
Wilkening S, Lin G, Fritsch ES, Tekkedil MM, Anders S, Kuehn R, Nguyen M, Aiyar RS, Proctor M, Sakhanenko NA, Galas DJ, Gagneur J, Deutschbauer A, Steinmetz LM. Wilkening S, et al. Among authors: gagneur j. Genetics. 2014 Mar;196(3):853-65. doi: 10.1534/genetics.113.160291. Epub 2013 Dec 27. Genetics. 2014. PMID: 24374355 Free PMC article.
4DXpress: a database for cross-species expression pattern comparisons.
Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. Haudry Y, et al. Among authors: gagneur j. Nucleic Acids Res. 2008 Jan;36(Database issue):D847-53. doi: 10.1093/nar/gkm797. Epub 2007 Oct 4. Nucleic Acids Res. 2008. PMID: 17916571 Free PMC article.
Experimental relocation of the mitochondrial ATP9 gene to the nucleus reveals forces underlying mitochondrial genome evolution.
Bietenhader M, Martos A, Tetaud E, Aiyar RS, Sellem CH, Kucharczyk R, Clauder-Münster S, Giraud MF, Godard F, Salin B, Sagot I, Gagneur J, Déquard-Chablat M, Contamine V, Hermann-Le Denmat S, Sainsard-Chanet A, Steinmetz LM, di Rago JP. Bietenhader M, et al. Among authors: gagneur j. PLoS Genet. 2012;8(8):e1002876. doi: 10.1371/journal.pgen.1002876. Epub 2012 Aug 16. PLoS Genet. 2012. PMID: 22916027 Free PMC article.
Publisher Correction: Transcriptome-wide association study of coronary artery disease identifies novel susceptibility genes.
Li L, Chen Z, von Scheidt M, Li S, Steiner A, Güldener U, Koplev S, Ma A, Hao K, Pan C, Lusis AJ, Pang S, Kessler T, Ermel R, Sukhavasi K, Ruusalepp A, Gagneur J, Erdmann J, Kovacic JC, Björkegren JLM, Schunkert H. Li L, et al. Among authors: gagneur j. Basic Res Cardiol. 2022 Apr 5;117(1):19. doi: 10.1007/s00395-022-00923-w. Basic Res Cardiol. 2022. PMID: 35381883 Free PMC article. No abstract available.
A yeast-based assay identifies drugs active against human mitochondrial disorders.
Couplan E, Aiyar RS, Kucharczyk R, Kabala A, Ezkurdia N, Gagneur J, St Onge RP, Salin B, Soubigou F, Le Cann M, Steinmetz LM, di Rago JP, Blondel M. Couplan E, et al. Among authors: gagneur j. Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11989-94. doi: 10.1073/pnas.1101478108. Epub 2011 Jun 29. Proc Natl Acad Sci U S A. 2011. PMID: 21715656 Free PMC article.
125 results