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Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.
Clarke JL, Cooper LD, Poelchau MF, Berardini TZ, Elser J, Farmer AD, Ficklin S, Kumari S, Laporte MA, Nelson RT, Sadohara R, Selby P, Thessen AE, Whitehead B, Sen TZ. Clarke JL, et al. Among authors: sen tz. Database (Oxford). 2023 Nov 15;2023:baad076. doi: 10.1093/database/baad076. Database (Oxford). 2023. PMID: 37971715 Free PMC article.
MaizeGDB becomes 'sequence-centric'.
Sen TZ, Andorf CM, Schaeffer ML, Harper LC, Sparks ME, Duvick J, Brendel VP, Cannon E, Campbell DA, Lawrence CJ. Sen TZ, et al. Database (Oxford). 2009;2009:bap020. doi: 10.1093/database/bap020. Epub 2009 Dec 7. Database (Oxford). 2009. PMID: 21847242 Free PMC article.
SNPversity: a web-based tool for visualizing diversity.
Schott DA, Vinnakota AG, Portwood JL 2nd, Andorf CM, Sen TZ. Schott DA, et al. Among authors: sen tz. Database (Oxford). 2018 Jan 1;2018:bay037. doi: 10.1093/database/bay037. Database (Oxford). 2018. PMID: 29688387 Free PMC article.
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D. Harper L, et al. Among authors: sen tz. Database (Oxford). 2018 Jan 1;2018:bay088. doi: 10.1093/database/bay088. Database (Oxford). 2018. PMID: 30239679 Free PMC article.
GrainGenes: a data-rich repository for small grains genetics and genomics.
Yao E, Blake VC, Cooper L, Wight CP, Michel S, Cagirici HB, Lazo GR, Birkett CL, Waring DJ, Jannink JL, Holmes I, Waters AJ, Eickholt DP, Sen TZ. Yao E, et al. Among authors: sen tz. Database (Oxford). 2022 May 25;2022:baac034. doi: 10.1093/database/baac034. Database (Oxford). 2022. PMID: 35616118 Free PMC article.
MaizeGDB: curation and outreach go hand-in-hand.
Schaeffer ML, Harper LC, Gardiner JM, Andorf CM, Campbell DA, Cannon EK, Sen TZ, Lawrence CJ. Schaeffer ML, et al. Among authors: sen tz. Database (Oxford). 2011 May 29;2011:bar022. doi: 10.1093/database/bar022. Print 2011. Database (Oxford). 2011. PMID: 21624896 Free PMC article.
62 results