Bhattacharyya S - Search Results

1

Lineage-specific 3D genome organization is assembled at multiple scales by IKAROS.

Hu Y, Salgado Figueroa D, Zhang Z, Veselits M, Bhattacharyya S, Kashiwagi M, Clark MR, Morgan BA, Ay F, Georgopoulos K. Hu Y, et al. Among authors: bhattacharyya s. Cell. 2023 Nov 22;186(24):5269-5289.e22. doi: 10.1016/j.cell.2023.10.023. Cell. 2023. PMID: 37995656 Free PMC article.

2

Reduced expression of phosphatase PTPN2 promotes pathogenic conversion of Tregs in autoimmunity.

Svensson MN, Doody KM, Schmiedel BJ, Bhattacharyya S, Panwar B, Wiede F, Yang S, Santelli E, Wu DJ, Sacchetti C, Gujar R, Seumois G, Kiosses WB, Aubry I, Kim G, Mydel P, Sakaguchi S, Kronenberg M, Tiganis T, Tremblay ML, Ay F, Vijayanand P, Bottini N. Svensson MN, et al. Among authors: bhattacharyya s. J Clin Invest. 2019 Mar 1;129(3):1193-1210. doi: 10.1172/JCI123267. Epub 2019 Feb 11. J Clin Invest. 2019. PMID: 30620725 Free PMC article.

3

Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer.

Clarke J, Panwar B, Madrigal A, Singh D, Gujar R, Wood O, Chee SJ, Eschweiler S, King EV, Awad AS, Hanley CJ, McCann KJ, Bhattacharyya S, Woo E, Alzetani A, Seumois G, Thomas GJ, Ganesan AP, Friedmann PS, Sanchez-Elsner T, Ay F, Ottensmeier CH, Vijayanand P. Clarke J, et al. Among authors: bhattacharyya s. J Exp Med. 2019 Sep 2;216(9):2128-2149. doi: 10.1084/jem.20190249. Epub 2019 Jun 21. J Exp Med. 2019. PMID: 31227543 Free PMC article.

4

Identification of significant chromatin contacts from HiChIP data by FitHiChIP.

Bhattacharyya S, Chandra V, Vijayanand P, Ay F. Bhattacharyya S, et al. Nat Commun. 2019 Sep 17;10(1):4221. doi: 10.1038/s41467-019-11950-y. Nat Commun. 2019. PMID: 31530818 Free PMC article.

5

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains.

Lhoumaud P, Badri S, Rodriguez-Hernaez J, Sakellaropoulos T, Sethia G, Kloetgen A, Cornwell M, Bhattacharyya S, Ay F, Bonneau R, Tsirigos A, Skok JA. Lhoumaud P, et al. Among authors: bhattacharyya s. Nat Commun. 2019 Oct 24;10(1):4843. doi: 10.1038/s41467-019-12811-4. Nat Commun. 2019. PMID: 31649247 Free PMC article.

6

Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2.

Kaul A, Bhattacharyya S, Ay F. Kaul A, et al. Among authors: bhattacharyya s. Nat Protoc. 2020 Mar;15(3):991-1012. doi: 10.1038/s41596-019-0273-0. Epub 2020 Jan 24. Nat Protoc. 2020. PMID: 31980751 Free PMC article.

7

Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants.

Chandra V, Bhattacharyya S, Schmiedel BJ, Madrigal A, Gonzalez-Colin C, Fotsing S, Crinklaw A, Seumois G, Mohammadi P, Kronenberg M, Peters B, Ay F, Vijayanand P. Chandra V, et al. Among authors: bhattacharyya s. Nat Genet. 2021 Jan;53(1):110-119. doi: 10.1038/s41588-020-00745-3. Epub 2020 Dec 21. Nat Genet. 2021. PMID: 33349701 Free PMC article.

8

COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types.

Schmiedel BJ, Rocha J, Gonzalez-Colin C, Bhattacharyya S, Madrigal A, Ottensmeier CH, Ay F, Chandra V, Vijayanand P. Schmiedel BJ, et al. Among authors: bhattacharyya s. Nat Commun. 2021 Nov 19;12(1):6760. doi: 10.1038/s41467-021-26888-3. Nat Commun. 2021. PMID: 34799557 Free PMC article.

9

Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type-dependent effects of disease-risk variants.

Schmiedel BJ, Gonzalez-Colin C, Fajardo V, Rocha J, Madrigal A, Ramírez-Suástegui C, Bhattacharyya S, Simon H, Greenbaum JA, Peters B, Seumois G, Ay F, Chandra V, Vijayanand P. Schmiedel BJ, et al. Among authors: bhattacharyya s. Sci Immunol. 2022 Feb 25;7(68):eabm2508. doi: 10.1126/sciimmunol.abm2508. Epub 2022 Feb 25. Sci Immunol. 2022. PMID: 35213211 Free PMC article.

10

Identifying genetic variants associated with chromatin looping and genome function.

Bhattacharyya S, Ay F. Bhattacharyya S, et al. Nat Commun. 2024 Sep 18;15(1):8174. doi: 10.1038/s41467-024-52296-4. Nat Commun. 2024. PMID: 39289357 Free PMC article.

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