Yousef M - Search Results

1

A toolbox of machine learning software to support microbiome analysis.

Marcos-Zambrano LJ, López-Molina VM, Bakir-Gungor B, Frohme M, Karaduzovic-Hadziabdic K, Klammsteiner T, Ibrahimi E, Lahti L, Loncar-Turukalo T, Dhamo X, Simeon A, Nechyporenko A, Pio G, Przymus P, Sampri A, Trajkovik V, Lacruz-Pleguezuelos B, Aasmets O, Araujo R, Anagnostopoulos I, Aydemir Ö, Berland M, Calle ML, Ceci M, Duman H, Gündoğdu A, Havulinna AS, Kaka Bra KHN, Kalluci E, Karav S, Lode D, Lopes MB, May P, Nap B, Nedyalkova M, Paciência I, Pasic L, Pujolassos M, Shigdel R, Susín A, Thiele I, Truică CO, Wilmes P, Yilmaz E, Yousef M, Claesson MJ, Truu J, Carrillo de Santa Pau E. Marcos-Zambrano LJ, et al. Among authors: yousef m. Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023. Front Microbiol. 2023. PMID: 38075858 Free PMC article. Review.

2

Invention of 3Mint for feature grouping and scoring in multi-omics.

Unlu Yazici M, Marron JS, Bakir-Gungor B, Zou F, Yousef M. Unlu Yazici M, et al. Among authors: yousef m. Front Genet. 2023 Mar 15;14:1093326. doi: 10.3389/fgene.2023.1093326. eCollection 2023. Front Genet. 2023. PMID: 37007972 Free PMC article.

3

Review of feature selection approaches based on grouping of features.

Kuzudisli C, Bakir-Gungor B, Bulut N, Qaqish B, Yousef M. Kuzudisli C, et al. Among authors: yousef m. PeerJ. 2023 Jul 17;11:e15666. doi: 10.7717/peerj.15666. eCollection 2023. PeerJ. 2023. PMID: 37483989 Free PMC article. Review.

4

GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning.

Ersoz NS, Bakir-Gungor B, Yousef M. Ersoz NS, et al. Among authors: yousef m. Front Genet. 2023 Aug 21;14:1139082. doi: 10.3389/fgene.2023.1139082. eCollection 2023. Front Genet. 2023. PMID: 37671046 Free PMC article.

5

TextNetTopics Pro, a topic model-based text classification for short text by integration of semantic and document-topic distribution information.

Voskergian D, Bakir-Gungor B, Yousef M. Voskergian D, et al. Among authors: yousef m. Front Genet. 2023 Oct 5;14:1243874. doi: 10.3389/fgene.2023.1243874. eCollection 2023. Front Genet. 2023. PMID: 37867598 Free PMC article.

6

microBiomeGSM: the identification of taxonomic biomarkers from metagenomic data using grouping, scoring and modeling (G-S-M) approach.

Bakir-Gungor B, Temiz M, Jabeer A, Wu D, Yousef M. Bakir-Gungor B, et al. Among authors: yousef m. Front Microbiol. 2023 Nov 22;14:1264941. doi: 10.3389/fmicb.2023.1264941. eCollection 2023. Front Microbiol. 2023. PMID: 38075911 Free PMC article.

7

Novel Antimicrobial Peptide Design Using Motif Match Score Representation.

Soylemez UG, Yousef M, Kesmen Z, Bakir-Gungor B. Soylemez UG, et al. Among authors: yousef m. IEEE/ACM Trans Comput Biol Bioinform. 2024 Jun 12;PP. doi: 10.1109/TCBB.2024.3413021. Online ahead of print. IEEE/ACM Trans Comput Biol Bioinform. 2024. PMID: 38865233

8

CCPred: Global and population-specific colorectal cancer prediction and metagenomic biomarker identification at different molecular levels using machine learning techniques.

Bakir-Gungor B, Temiz M, Inal Y, Cicekyurt E, Yousef M. Bakir-Gungor B, et al. Among authors: yousef m. Comput Biol Med. 2024 Nov;182:109098. doi: 10.1016/j.compbiomed.2024.109098. Epub 2024 Sep 17. Comput Biol Med. 2024. PMID: 39293338

9

Predictive factors for degenerative lumbar spinal stenosis: a model obtained from a machine learning algorithm technique.

Abbas J, Yousef M, Peled N, Hershkovitz I, Hamoud K. Abbas J, et al. Among authors: yousef m. BMC Musculoskelet Disord. 2023 Mar 23;24(1):218. doi: 10.1186/s12891-023-06330-z. BMC Musculoskelet Disord. 2023. PMID: 36949452 Free PMC article.

10

miRGediNET: A comprehensive examination of common genes in miRNA-Target interactions and disease associations: Insights from a grouping-scoring-modeling approach.

Qumsiyeh E, Salah Z, Yousef M. Qumsiyeh E, et al. Among authors: yousef m. Heliyon. 2023 Nov 22;9(12):e22666. doi: 10.1016/j.heliyon.2023.e22666. eCollection 2023 Dec. Heliyon. 2023. PMID: 38090011 Free PMC article.

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