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Towards scalable genomic data access.
Hernaez M. Hernaez M. Nat Comput Sci. 2021 Jun;1(6):391-392. doi: 10.1038/s43588-021-00089-w. Nat Comput Sci. 2021. PMID: 38217235 No abstract available.
SPRING: a next-generation compressor for FASTQ data.
Chandak S, Tatwawadi K, Ochoa I, Hernaez M, Weissman T. Chandak S, et al. Among authors: hernaez m. Bioinformatics. 2019 Aug 1;35(15):2674-2676. doi: 10.1093/bioinformatics/bty1015. Bioinformatics. 2019. PMID: 30535063 Free PMC article.
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.
Alberti C, Daniels N, Hernaez M, Voges J, Goldfeder RL, Hernandez-Lopez AA, Mattavelli M, Berger B. Alberti C, et al. Among authors: hernaez m. Proc Data Compress Conf. 2016 Mar-Apr;2016:221-230. doi: 10.1109/DCC.2016.39. Epub 2016 Dec 19. Proc Data Compress Conf. 2016. PMID: 28845445 Free PMC article.
A cluster-based approach to compression of Quality Scores.
Hernaez M, Ochoa I, Weissman T. Hernaez M, et al. Proc Data Compress Conf. 2016 Mar-Apr;2016:261-270. doi: 10.1109/DCC.2016.49. Epub 2016 Dec 19. Proc Data Compress Conf. 2016. PMID: 29057318 Free PMC article.
QVZ: lossy compression of quality values.
Malysa G, Hernaez M, Ochoa I, Rao M, Ganesan K, Weissman T. Malysa G, et al. Among authors: hernaez m. Bioinformatics. 2018 Jan 1;34(1):179. doi: 10.1093/bioinformatics/btx654. Bioinformatics. 2018. PMID: 29177464 Free PMC article. No abstract available.
Cell-type specific polysome profiling from mammalian tissues.
Seimetz J, Arif W, Bangru S, Hernaez M, Kalsotra A. Seimetz J, et al. Among authors: hernaez m. Methods. 2019 Feb 15;155:131-139. doi: 10.1016/j.ymeth.2018.11.015. Epub 2018 Nov 27. Methods. 2019. PMID: 30500367 Free PMC article.
101 results