Cheng L - Search Results

1

Accurate identification of structural variations from cancer samples.

Li L, Hong C, Xu J, Chung CY, Leung AK, Boncan DAT, Cheng L, Lo KW, Lai PBS, Wong J, Zhou J, Cheng AS, Chan TF, Yue F, Yip KY. Li L, et al. Among authors: cheng l, cheng as. Brief Bioinform. 2023 Nov 22;25(1):bbad520. doi: 10.1093/bib/bbad520. Brief Bioinform. 2023. PMID: 38233091 Free PMC article.

2

ICN: a normalization method for gene expression data considering the over-expression of informative genes.

Cheng L, Wang X, Wong PK, Lee KY, Li L, Xu B, Wang D, Leung KS. Cheng L, et al. Mol Biosyst. 2016 Oct 20;12(10):3057-66. doi: 10.1039/c6mb00386a. Epub 2016 Jul 25. Mol Biosyst. 2016. PMID: 27452923

3

A network-based algorithm for the identification of moonlighting noncoding RNAs and its application in sepsis.

Liu X, Xu Y, Wang R, Liu S, Wang J, Luo Y, Leung KS, Cheng L. Liu X, et al. Among authors: cheng l. Brief Bioinform. 2021 Jan 18;22(1):581-588. doi: 10.1093/bib/bbz154. Brief Bioinform. 2021. PMID: 32003790

4

Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia.

Wang R, Zheng X, Wang J, Wan S, Song F, Wong MH, Leung KS, Cheng L. Wang R, et al. Among authors: cheng l. Brief Bioinform. 2022 Mar 10;23(2):bbac002. doi: 10.1093/bib/bbac002. Brief Bioinform. 2022. PMID: 35136933

5

Commonly used software tools produce conflicting and overly-optimistic AUPRC values.

Chen W, Miao C, Zhang Z, Fung CS, Wang R, Chen Y, Qian Y, Cheng L, Yip KY, Tsui SK, Cao Q. Chen W, et al. Among authors: cheng l. Genome Biol. 2024 May 13;25(1):118. doi: 10.1186/s13059-024-03266-y. Genome Biol. 2024. PMID: 38741205 Free PMC article.

6

Extracting consistent knowledge from highly inconsistent cancer gene data sources.

Gong X, Wu R, Zhang Y, Zhao W, Cheng L, Gu Y, Zhang L, Wang J, Zhu J, Guo Z. Gong X, et al. Among authors: cheng l. BMC Bioinformatics. 2010 Feb 5;11:76. doi: 10.1186/1471-2105-11-76. BMC Bioinformatics. 2010. PMID: 20137077 Free PMC article.

7

Identification and characterization of moonlighting long non-coding RNAs based on RNA and protein interactome.

Cheng L, Leung KS. Cheng L, et al. Bioinformatics. 2018 Oct 15;34(20):3519-3528. doi: 10.1093/bioinformatics/bty399. Bioinformatics. 2018. PMID: 29771280

8

meGPS: a multi-omics signature for hepatocellular carcinoma detection integrating methylome and transcriptome data.

Wu Q, Zheng X, Leung KS, Wong MH, Tsui SK, Cheng L. Wu Q, et al. Among authors: cheng l. Bioinformatics. 2022 Jul 11;38(14):3513-3522. doi: 10.1093/bioinformatics/btac379. Bioinformatics. 2022. PMID: 35674358

9

GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion.

Cheng L, Wu H, Zheng X, Zhang N, Zhao P, Wang R, Wu Q, Liu T, Yang X, Geng Q. Cheng L, et al. Bioinformatics. 2023 Jan 1;39(1):btac850. doi: 10.1093/bioinformatics/btac850. Bioinformatics. 2023. PMID: 36637205 Free PMC article.

10

Commonly used software tools produce conflicting and overly-optimistic AUPRC values.

Chen W, Miao C, Zhang Z, Fung CS, Wang R, Chen Y, Qian Y, Cheng L, Yip KY, Tsui SK, Cao Q. Chen W, et al. Among authors: cheng l. bioRxiv [Preprint]. 2024 Feb 7:2024.02.02.578654. doi: 10.1101/2024.02.02.578654. bioRxiv. 2024. Update in: Genome Biol. 2024 May 13;25(1):118. doi: 10.1186/s13059-024-03266-y PMID: 38370825 Free PMC article. Updated. Preprint.

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