Rocha U - Search Results

1

Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater.

Abdulkadir N, Saraiva JP, Zhang J, Stolte S, Gillor O, Harms H, Rocha U. Abdulkadir N, et al. Among authors: rocha u. Microbiol Spectr. 2024 Mar 5;12(3):e0291823. doi: 10.1128/spectrum.02918-23. Epub 2024 Jan 30. Microbiol Spectr. 2024. PMID: 38289113 Free PMC article.

2

Enrichment of Anaerobic Microbial Communities from Midgut and Hindgut of Sun Beetle Larvae (Pachnoda marginata) on Wheat Straw: Effect of Inoculum Preparation.

Schroeder BG, Logroño W, Rocha UND, Harms H, Nikolausz M. Schroeder BG, et al. Microorganisms. 2022 Mar 31;10(4):761. doi: 10.3390/microorganisms10040761. Microorganisms. 2022. PMID: 35456811 Free PMC article.

3

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.

Rocha U, Coelho Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Štefanič P, Bicalho MF, Borim Correa F, Baştürk MN, Fousekis E, Viana Barbosa LM, Plewka J, Probst AJ, Baldrian P, Stadler PF; CLUE-TERRA Consortium. Rocha U, et al. Mol Ecol Resour. 2024 Feb;24(2):e13904. doi: 10.1111/1755-0998.13904. Epub 2023 Nov 23. Mol Ecol Resour. 2024. PMID: 37994269

4

Identification of Huge Phages from Wastewater Metagenomes.

Kallies R, Hu D, Abdulkadir N, Schloter M, Rocha U. Kallies R, et al. Among authors: rocha u. Viruses. 2023 Nov 28;15(12):2330. doi: 10.3390/v15122330. Viruses. 2023. PMID: 38140571 Free PMC article.

5

Viral Communities Contribute More to the Lysis of Antibiotic-Resistant Bacteria than the Transduction of Antibiotic Resistance Genes in Anaerobic Digestion Revealed by Metagenomics.

Zhang J, Lu T, Song Y, Rocha UND, Liu J, Nikolausz M, Wei Y, Richnow HH. Zhang J, et al. Among authors: rocha und. Environ Sci Technol. 2024 Feb 6;58(5):2346-2359. doi: 10.1021/acs.est.3c07664. Epub 2024 Jan 24. Environ Sci Technol. 2024. PMID: 38267392 Free PMC article.

6

Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in prokaryotic metagenome-assembled genome recovery.

Rocha U, Kasmanas JC, Toscan R, Sanches DS, Magnusdottir S, Saraiva JP. Rocha U, et al. PLoS Comput Biol. 2024 Oct 22;20(10):e1012530. doi: 10.1371/journal.pcbi.1012530. eCollection 2024 Oct. PLoS Comput Biol. 2024. PMID: 39436938 Free PMC article.

7

Unravelling a Latent Pathobiome Across Coral Reef Biotopes.

Oliveira V, Cleary DFR, Polónia ARM, Huang YM, Rocha U, Voogd NJ, Gomes NCM. Oliveira V, et al. Among authors: rocha u. Environ Microbiol. 2024 Dec;26(12):e70008. doi: 10.1111/1462-2920.70008. Environ Microbiol. 2024. PMID: 39705298

8

Sequential Anaerobic-Aerobic Treatment Enhances Sulfamethoxazole Removal: From Batch Cultures to Observations in a Large-Scale Wastewater Treatment Plant.

Akay C, Ulrich N, Rocha U, Ding C, Adrian L. Akay C, et al. Among authors: rocha u. Environ Sci Technol. 2024 Jul 16;58(28):12609-12620. doi: 10.1021/acs.est.4c00368. Epub 2024 Jul 7. Environ Sci Technol. 2024. PMID: 38973247 Free PMC article.

9

Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon.

Silva SG, Nabhan Homsi M, Keller-Costa T, Rocha U, Costa R. Silva SG, et al. Among authors: rocha u. mSystems. 2023 Dec 21;8(6):e0064323. doi: 10.1128/msystems.00643-23. Epub 2023 Nov 29. mSystems. 2023. PMID: 38018967 Free PMC article.

10

BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification.

Avila Santos AP, de Almeida BLS, Bonidia RP, Stadler PF, Stefanic P, Mandic-Mulec I, Rocha U, Sanches DS, de Carvalho ACPLF. Avila Santos AP, et al. Among authors: rocha u. RNA Biol. 2024 Jan;21(1):1-12. doi: 10.1080/15476286.2024.2329451. Epub 2024 Mar 25. RNA Biol. 2024. PMID: 38528797 Free PMC article.

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