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Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex.
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, Miller M, Krienen FM, Zhang Q, Taskin N, Ting J, Feng G, McCarroll SA, Callaway EM, Wang T, Behrens MM, Lein ES, Ecker JR, Ren B. Zemke NR, et al. Among authors: ecker jr. bioRxiv [Preprint]. 2023 Apr 8:2023.04.08.536119. doi: 10.1101/2023.04.08.536119. bioRxiv. 2023. PMID: 37066152 Free PMC article. Preprint.
Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain.
Liu H, Zeng Q, Zhou J, Bartlett A, Wang BA, Berube P, Tian W, Kenworthy M, Altshul J, Nery JR, Chen H, Castanon RG, Zu S, Li YE, Lucero J, Osteen JK, Pinto-Duarte A, Lee J, Rink J, Cho S, Emerson N, Nunn M, O'Connor C, Yao Z, Smith KA, Tasic B, Zeng H, Luo C, Dixon JR, Ren B, Behrens MM, Ecker JR. Liu H, et al. Among authors: ecker jr. bioRxiv [Preprint]. 2023 Apr 18:2023.04.16.536509. doi: 10.1101/2023.04.16.536509. bioRxiv. 2023. Update in: Nature. 2023 Dec;624(7991):366-377. doi: 10.1038/s41586-023-06805-y PMID: 37131654 Free PMC article. Updated. Preprint.
Genetics and Environment Distinctively Shape the Human Immune Cell Epigenome.
Wang W, Hariharan M, Ding W, Bartlett A, Barragan C, Castanon R, Rothenberg V, Song H, Nery J, Aldridge A, Altshul J, Kenworthy M, Liu H, Tian W, Zhou J, Zeng Q, Chen H, Wei B, Gündüz IB, Norell T, Broderick TJ, McClain MT, Satterwhite LL, Burke TW, Petzold EA, Shen X, Woods CW, Fowler VG Jr, Ruffin F, Panuwet P, Barr DB, Beare JL, Smith AK, Spurbeck RR, Vangeti S, Ramos I, Nudelman G, Sealfon SC, Castellino F, Walley AM, Evans T, Müller F, Greenleaf WJ, Ecker JR. Wang W, et al. Among authors: ecker jr. bioRxiv [Preprint]. 2025 Jan 4:2023.06.29.546792. doi: 10.1101/2023.06.29.546792. bioRxiv. 2025. PMID: 37425926 Free PMC article. Preprint.
Cell-type-specific effects of age and sex on human cortical neurons.
Chien JF, Liu H, Wang BA, Luo C, Bartlett A, Castanon R, Johnson ND, Nery JR, Osteen J, Li J, Altshul J, Kenworthy M, Valadon C, Liem M, Claffey N, O'Connor C, Seeker LA, Ecker JR, Behrens MM, Mukamel EA. Chien JF, et al. Among authors: ecker jr. Neuron. 2024 Aug 7;112(15):2524-2539.e5. doi: 10.1016/j.neuron.2024.05.013. Epub 2024 Jun 4. Neuron. 2024. PMID: 38838671 Free article.
Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina.
Yuan Y, Biswas P, Zemke NR, Dang K, Wu Y, D'Antonio M, Xie Y, Yang Q, Dong K, Lau PK, Li D, Seng C, Bartosik W, Buchanan J, Lin L, Lancione R, Wang K, Lee S, Gibbs Z, Ecker J, Frazer K, Wang T, Preissl S, Wang A, Ayyagari R, Ren B. Yuan Y, et al. bioRxiv [Preprint]. 2024 Dec 29:2024.12.28.630634. doi: 10.1101/2024.12.28.630634. bioRxiv. 2024. PMID: 39764062 Free PMC article. Preprint.
Deconvolution of polygenic risk score in single cells unravels cellular and molecular heterogeneity of complex human diseases.
Zhang S, Shu H, Zhou J, Rubin-Sigler J, Yang X, Liu Y, Cooper-Knock J, Monte E, Zhu C, Tu S, Li H, Tong M, Ecker JR, Ichida JK, Shen Y, Zeng J, Tsao PS, Snyder MP. Zhang S, et al. Among authors: ecker jr. bioRxiv [Preprint]. 2024 May 14:2024.05.14.594252. doi: 10.1101/2024.05.14.594252. bioRxiv. 2024. PMID: 38798507 Free PMC article. Preprint.
342 results