Kai Y - Search Results

1

Matrin3 mediates differentiation through stabilizing chromatin loop-domain interactions and YY1 mediated enhancer-promoter interactions.

Liu T, Zhu Q, Kai Y, Bingham T, Wang S, Cha HJ, Mehta S, Schlaeger TM, Yuan GC, Orkin SH. Liu T, et al. Among authors: kai y. Nat Commun. 2024 Feb 10;15(1):1274. doi: 10.1038/s41467-024-45386-w. Nat Commun. 2024. PMID: 38341433 Free PMC article.

2

Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features.

Kai Y, Andricovich J, Zeng Z, Zhu J, Tzatsos A, Peng W. Kai Y, et al. Nat Commun. 2018 Oct 11;9(1):4221. doi: 10.1038/s41467-018-06664-6. Nat Commun. 2018. PMID: 30310060 Free PMC article.

3

Transcription factor competition at the γ-globin promoters controls hemoglobin switching.

Liu N, Xu S, Yao Q, Zhu Q, Kai Y, Hsu JY, Sakon P, Pinello L, Yuan GC, Bauer DE, Orkin SH. Liu N, et al. Among authors: kai y. Nat Genet. 2021 Apr;53(4):511-520. doi: 10.1038/s41588-021-00798-y. Epub 2021 Mar 1. Nat Genet. 2021. PMID: 33649594 Free PMC article.

4

Author Correction: Transcription factor competition at the γ-globin promoters controls hemoglobin switching.

Liu N, Xu S, Yao Q, Zhu Q, Kai Y, Hsu JY, Sakon P, Pinello L, Yuan GC, Bauer DE, Orkin SH. Liu N, et al. Among authors: kai y. Nat Genet. 2021 Apr;53(4):586. doi: 10.1038/s41588-021-00834-x. Nat Genet. 2021. PMID: 33731942 Free PMC article. No abstract available.

5

Mapping the evolving landscape of super-enhancers during cell differentiation.

Kai Y, Li BE, Zhu M, Li GY, Chen F, Han Y, Cha HJ, Orkin SH, Cai W, Huang J, Yuan GC. Kai Y, et al. Genome Biol. 2021 Sep 15;22(1):269. doi: 10.1186/s13059-021-02485-x. Genome Biol. 2021. PMID: 34526084 Free PMC article.

6

Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture.

Cha HJ, Uyan Ö, Kai Y, Liu T, Zhu Q, Tothova Z, Botten GA, Xu J, Yuan GC, Dekker J, Orkin SH. Cha HJ, et al. Among authors: kai y. Nat Commun. 2021 Oct 29;12(1):6241. doi: 10.1038/s41467-021-26574-4. Nat Commun. 2021. PMID: 34716321 Free PMC article.

7

MLL::AF9 degradation induces rapid changes in transcriptional elongation and subsequent loss of an active chromatin landscape.

Olsen SN, Godfrey L, Healy JP, Choi YA, Kai Y, Hatton C, Perner F, Haarer EL, Nabet B, Yuan GC, Armstrong SA. Olsen SN, et al. Among authors: kai y. Mol Cell. 2022 Mar 17;82(6):1140-1155.e11. doi: 10.1016/j.molcel.2022.02.013. Epub 2022 Mar 3. Mol Cell. 2022. PMID: 35245435 Free PMC article.

8

A distinct core regulatory module enforces oncogene expression in KMT2A-rearranged leukemia.

Harada T, Heshmati Y, Kalfon J, Perez MW, Xavier Ferrucio J, Ewers J, Hubbell Engler B, Kossenkov A, Ellegast JM, Yi JS, Bowker A, Zhu Q, Eagle K, Liu T, Kai Y, Dempster JM, Kugener G, Wickramasinghe J, Herbert ZT, Li CH, Vrabič Koren J, Weinstock DM, Paralkar VR, Nabet B, Lin CY, Dharia NV, Stegmaier K, Orkin SH, Pimkin M. Harada T, et al. Among authors: kai y. Genes Dev. 2022 Mar 1;36(5-6):368-389. doi: 10.1101/gad.349284.121. Epub 2022 Mar 17. Genes Dev. 2022. PMID: 35301220 Free PMC article.

9

Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degradation of BCL11A protein in erythroid cells.

Mehta S, Buyanbat A, Kai Y, Karayel O, Goldman SR, Seruggia D, Zhang K, Fujiwara Y, Donovan KA, Zhu Q, Yang H, Nabet B, Gray NS, Mann M, Fischer ES, Adelman K, Orkin SH. Mehta S, et al. Among authors: kai y. Cell Chem Biol. 2022 Aug 18;29(8):1273-1287.e8. doi: 10.1016/j.chembiol.2022.06.007. Epub 2022 Jul 14. Cell Chem Biol. 2022. PMID: 35839780 Free PMC article.

10

Identifying quantitatively differential chromosomal compartmentalization changes and their biological significance from Hi-C data using DARIC.

Kai Y, Liu N, Orkin SH, Yuan GC. Kai Y, et al. BMC Genomics. 2023 Oct 13;24(1):614. doi: 10.1186/s12864-023-09675-w. BMC Genomics. 2023. PMID: 37833630 Free PMC article.

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