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Page 1
A supervised learning method for classifying methylation disorders.
Walsh JR, Sun G, Balan J, Hardcastle J, Vollenweider J, Jerde C, Rumilla K, Koellner C, Koleilat A, Hasadsri L, Kipp B, Jenkinson G, Klee E. Walsh JR, et al. Among authors: balan j. BMC Bioinformatics. 2024 Feb 12;25(1):66. doi: 10.1186/s12859-024-05673-1. BMC Bioinformatics. 2024. PMID: 38347515 Free PMC article.
COVID-19 Mortality Prediction From Deep Learning in a Large Multistate Electronic Health Record and Laboratory Information System Data Set: Algorithm Development and Validation.
Sankaranarayanan S, Balan J, Walsh JR, Wu Y, Minnich S, Piazza A, Osborne C, Oliver GR, Lesko J, Bates KL, Khezeli K, Block DR, DiGuardo M, Kreuter J, O'Horo JC, Kalantari J, Klee EW, Salama ME, Kipp B, Morice WG, Jenkinson G. Sankaranarayanan S, et al. Among authors: balan j. J Med Internet Res. 2021 Sep 28;23(9):e30157. doi: 10.2196/30157. J Med Internet Res. 2021. PMID: 34449401 Free PMC article.
SeekFusion - A Clinically Validated Fusion Transcript Detection Pipeline for PCR-Based Next-Generation Sequencing of RNA.
Balan J, Jenkinson G, Nair A, Saha N, Koganti T, Voss J, Zysk C, Barr Fritcher EG, Ross CA, Giannini C, Raghunathan A, Kipp BR, Jenkins R, Ida C, Halling KC, Blackburn PR, Dasari S, Oliver GR, Klee EW. Balan J, et al. Front Genet. 2021 Oct 22;12:739054. doi: 10.3389/fgene.2021.739054. eCollection 2021. Front Genet. 2021. PMID: 34745213 Free PMC article.
SARCP, a Clinical Next-Generation Sequencing Assay for the Detection of Gene Fusions in Sarcomas: A Description of the First 652 Cases.
Atiq MA, Balan J, Blackburn PR, Gross JM, Voss JS, Jin L, Fadra N, Davila JI, Pitel BA, Siqueira Parrilha Terra SB, Minn KT, Jackson RA, Hofich CD, Willkomm KS, Peterson BJ, Clausen SN, Rumilla KM, Gupta S, Lo YC, Ida CM, Molligan JF, Thangaiah JJ, Petersen MJ, Sukov WR, Guo R, Giannini C, Schoolmeester JK 2nd, Fritchie K, Inwards CY, Folpe AL, Oliveira AM, Torres-Mora J, Kipp BR, Halling KC. Atiq MA, et al. Among authors: balan j. J Mol Diagn. 2025 Jan;27(1):74-95. doi: 10.1016/j.jmoldx.2024.10.004. Epub 2024 Nov 7. J Mol Diagn. 2025. PMID: 39521244
Automation of hybridization and capture based next generation sequencing library preparation requires reduction of on-deck bead binding and heated wash temperatures.
Zimmerman Zuckerman E, Thompson JA, Schneider AR, Campion MB, Johns JJ, Stier TJ, Peterson LM, Ward AM, Blommel JH, Gnanaolivu RD, Lauer KP, Sivasankaran G, Balan J, Dasari S, Sakai Y, Marcou CA, Zheng G, Halling KC, Shen W, Viswanatha DS, Niu Z. Zimmerman Zuckerman E, et al. Among authors: balan j. SLAS Technol. 2022 Jun;27(3):214-218. doi: 10.1016/j.slast.2021.10.016. Epub 2021 Nov 26. SLAS Technol. 2022. PMID: 35058215 Free article.
Variant Detection in 3' Exons of PMS2 Using Exome Sequencing Data.
Mistry NA, Roellinger SE, Manninen MC, Gandham M, Koganti T, Balan J, Basu S, Blake EJ, Tandale PP, Holdren MA, Hoenig MF, Urban RM, Veith RL, Kendzior MC, Wang C, Gupta S, Shen W. Mistry NA, et al. Among authors: balan j. J Mol Diagn. 2024 Sep;26(9):843-850. doi: 10.1016/j.jmoldx.2024.06.001. Epub 2024 Jun 24. J Mol Diagn. 2024. PMID: 38925456
71 results