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Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses.
Rahman N, O'Cathail C, Zyoud A, Sokolov A, Oude Munnink B, Grüning B, Cummins C, Amid C, Nieuwenhuijse DF, Visontai D, Yuan DY, Gupta D, Prasad DK, Gulyás GM, Rinck G, McKinnon J, Rajan J, Knaggs J, Skiby JE, Stéger J, Szarvas J, Gueye K, Papp K, Hoek M, Kumar M, Ventouratou MA, Bouquieaux MC, Koliba M, Mansurova M, Haseeb M, Worp N, Harrison PW, Leinonen R, Thorne R, Selvakumar S, Hunt S, Venkataraman S, Jayathilaka S, Cezard T, Maier W, Waheed Z, Iqbal Z, Aarestrup FM, Csabai I, Koopmans M, Burdett T, Cochrane G. Rahman N, et al. Among authors: yuan dy. Microb Genom. 2024 Feb;10(2):001188. doi: 10.1099/mgen.0.001188. Microb Genom. 2024. PMID: 38358325 Free PMC article.
The European Nucleotide Archive in 2022.
Burgin J, Ahamed A, Cummins C, Devraj R, Gueye K, Gupta D, Gupta V, Haseeb M, Ihsan M, Ivanov E, Jayathilaka S, Balavenkataraman Kadhirvelu V, Kumar M, Lathi A, Leinonen R, Mansurova M, McKinnon J, O'Cathail C, Paupério J, Pesant S, Rahman N, Rinck G, Selvakumar S, Suman S, Vijayaraja S, Waheed Z, Woollard P, Yuan D, Zyoud A, Burdett T, Cochrane G. Burgin J, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D121-D125. doi: 10.1093/nar/gkac1051. Nucleic Acids Res. 2023. PMID: 36399492 Free PMC article.
The European Nucleotide Archive in 2023.
Yuan D, Ahamed A, Burgin J, Cummins C, Devraj R, Gueye K, Gupta D, Gupta V, Haseeb M, Ihsan M, Ivanov E, Jayathilaka S, Kadhirvelu VB, Kumar M, Lathi A, Leinonen R, McKinnon J, Meszaros L, O'Cathail C, Ouma D, Paupério J, Pesant S, Rahman N, Rinck G, Selvakumar S, Suman S, Sunthornyotin Y, Ventouratou M, Vijayaraja S, Waheed Z, Woollard P, Zyoud A, Burdett T, Cochrane G. Yuan D, et al. Nucleic Acids Res. 2024 Jan 5;52(D1):D92-D97. doi: 10.1093/nar/gkad1067. Nucleic Acids Res. 2024. PMID: 37956313 Free PMC article.
The European Nucleotide Archive in 2024.
O'Cathail C, Ahamed A, Burgin J, Cummins C, Devaraj R, Gueye K, Gupta D, Gupta V, Haseeb M, Ihsan M, Ivanov E, Jayathilaka S, Kadhirvelu V, Kumar M, Lathi A, Leinonen R, McKinnon J, Meszaros L, Pauperio J, Pesant S, Rahman N, Rinck G, Selvakumar S, Suman S, Sunthornyotin Y, Ventouratou M, Waheed Z, Woollard P, Yuan D, Zyoud A, Burdett T, Cochrane G. O'Cathail C, et al. Nucleic Acids Res. 2025 Jan 6;53(D1):D49-D55. doi: 10.1093/nar/gkae975. Nucleic Acids Res. 2025. PMID: 39558171 Free PMC article.
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S. Varadi M, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D439-D444. doi: 10.1093/nar/gkab1061. Nucleic Acids Res. 2022. PMID: 34791371 Free PMC article.
A New Cloud-Native Tool for Pharmacogenetic Analysis.
Yuan DY, Park JH, Li Z, Thomas R, Hwang DM, Fu L. Yuan DY, et al. Genes (Basel). 2024 Mar 11;15(3):352. doi: 10.3390/genes15030352. Genes (Basel). 2024. PMID: 38540411 Free PMC article.
75 results