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Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues.
Bai Z, Zhang D, Gao Y, Tao B, Bao S, Enninful A, Zhang D, Su G, Tian X, Zhang N, Xiao Y, Liu Y, Gerstein M, Li M, Xing Y, Lu J, Xu ML, Fan R. Bai Z, et al. Among authors: liu y. bioRxiv [Preprint]. 2024 Feb 8:2024.02.06.579143. doi: 10.1101/2024.02.06.579143. bioRxiv. 2024. Update in: Cell. 2024 Nov 14;187(23):6760-6779.e24. doi: 10.1016/j.cell.2024.09.001 PMID: 38370833 Free PMC article. Updated. Preprint.
Cell-type-resolved somatic mosaicism reveals clonal dynamics of the human forebrain.
Chung C, Yang X, Hevner RF, Kennedy K, Vong KI, Liu Y, Patel A, Nedunuri R, Barton ST, Barrows C, Stanley V, Mittal S, Breuss MW, Schlachetzki JCM, Gleeson JG. Chung C, et al. Among authors: liu y. bioRxiv [Preprint]. 2023 Oct 26:2023.10.24.563814. doi: 10.1101/2023.10.24.563814. bioRxiv. 2023. Update in: Nature. 2024 May;629(8011):384-392. doi: 10.1038/s41586-024-07292-5 PMID: 37961480 Free PMC article. Updated. Preprint.
Canonical AREs are tumor suppressive regulatory elements in the prostate.
Augello MA, Chen X, Liu D, Lin K, Hakansson A, Sjöström M, Khani F, Deonarine LD, Liu Y, Travascio-Green J, Wu J, Loda M, Feng FY, Robinson BD, Davicioni E, Sboner A, Barbieri CE. Augello MA, et al. Among authors: liu y, liu d. bioRxiv [Preprint]. 2024 Feb 27:2024.02.23.581466. doi: 10.1101/2024.02.23.581466. bioRxiv. 2024. Update in: Nat Commun. 2024 Dec 13;15(1):10675. doi: 10.1038/s41467-024-53734-z PMID: 38464162 Free PMC article. Updated. Preprint.
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression.
Mortenson KL, Dawes C, Wilson ER, Patchen NE, Johnson HE, Gertz J, Bailey SD, Liu Y, Varley KE, Zhang X. Mortenson KL, et al. Among authors: liu y. bioRxiv [Preprint]. 2024 Jun 21:2024.01.23.576965. doi: 10.1101/2024.01.23.576965. bioRxiv. 2024. Update in: Nat Commun. 2024 Jul 20;15(1):6130. doi: 10.1038/s41467-024-50387-w PMID: 38328209 Free PMC article. Updated. Preprint.
Nuclear Localization of Argonaute is affected by Cell Density and May Relieve Repression by microRNAs.
Johnson KC, Kilikevicius A, Hofman C, Hu J, Liu Y, Aguilar S, Graswich J, Han Y, Wang T, Westcott JM, Brekken RA, Peng L, Karagkounis G, Corey DR. Johnson KC, et al. Among authors: liu y. bioRxiv [Preprint]. 2023 Jul 12:2023.07.07.548119. doi: 10.1101/2023.07.07.548119. bioRxiv. 2023. Update in: Nucleic Acids Res. 2024 Feb 28;52(4):1930-1952. doi: 10.1093/nar/gkad1155 PMID: 37461596 Free PMC article. Updated. Preprint.
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