Savojardo C - Search Results

1

CoCoNat: A Deep Learning-Based Tool for the Prediction of Coiled-coil Domains in Protein Sequences.

Manfredi M, Savojardo C, Martelli PL, Casadio R. Manfredi M, et al. Among authors: savojardo c. Bio Protoc. 2024 Feb 20;14(4):e4935. doi: 10.21769/BioProtoc.4935. eCollection 2024 Feb 20. Bio Protoc. 2024. PMID: 38405078 Free PMC article.

2

Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications.

Fariselli P, Savojardo C, Martelli PL, Casadio R. Fariselli P, et al. Among authors: savojardo c. Algorithms Mol Biol. 2009 Oct 22;4:13. doi: 10.1186/1748-7188-4-13. Algorithms Mol Biol. 2009. PMID: 19849839 Free PMC article.

3

MemPype: a pipeline for the annotation of eukaryotic membrane proteins.

Pierleoni A, Indio V, Savojardo C, Fariselli P, Martelli PL, Casadio R. Pierleoni A, et al. Among authors: savojardo c. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W375-80. doi: 10.1093/nar/gkr282. Epub 2011 May 4. Nucleic Acids Res. 2011. PMID: 21543452 Free PMC article.

4

Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization.

Savojardo C, Fariselli P, Alhamdoosh M, Martelli PL, Pierleoni A, Casadio R. Savojardo C, et al. Bioinformatics. 2011 Aug 15;27(16):2224-30. doi: 10.1093/bioinformatics/btr387. Epub 2011 Jun 29. Bioinformatics. 2011. PMID: 21715467

5

Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines.

Savojardo C, Fariselli P, Casadio R. Savojardo C, et al. Bioinformatics. 2011 Nov 15;27(22):3123-8. doi: 10.1093/bioinformatics/btr549. Epub 2011 Oct 3. Bioinformatics. 2011. PMID: 21967762

6

BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes.

Savojardo C, Fariselli P, Casadio R. Savojardo C, et al. Bioinformatics. 2013 Feb 15;29(4):504-5. doi: 10.1093/bioinformatics/bts728. Epub 2013 Jan 6. Bioinformatics. 2013. PMID: 23297037

7

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations.

Savojardo C, Fariselli P, Martelli PL, Casadio R. Savojardo C, et al. BMC Bioinformatics. 2013;14 Suppl 1(Suppl 1):S10. doi: 10.1186/1471-2105-14-S1-S10. Epub 2013 Jan 14. BMC Bioinformatics. 2013. PMID: 23368835 Free PMC article.

8

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

Indio V, Martelli PL, Savojardo C, Fariselli P, Casadio R. Indio V, et al. Among authors: savojardo c. Bioinformatics. 2013 Apr 15;29(8):981-8. doi: 10.1093/bioinformatics/btt089. Epub 2013 Feb 21. Bioinformatics. 2013. PMID: 23428638

9

BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.

Savojardo C, Fariselli P, Martelli PL, Casadio R. Savojardo C, et al. Bioinformatics. 2013 Dec 15;29(24):3151-7. doi: 10.1093/bioinformatics/btt555. Epub 2013 Sep 23. Bioinformatics. 2013. PMID: 24064422 Free PMC article.

10

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.

Savojardo C, Martelli PL, Fariselli P, Casadio R. Savojardo C, et al. Bioinformatics. 2014 Oct 15;30(20):2973-4. doi: 10.1093/bioinformatics/btu411. Epub 2014 Jun 27. Bioinformatics. 2014. PMID: 24974200

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