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Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients.
Pickering H, Schaenman J, Phan HV, Maguire C, Tsitsiklis A, Rouphael N, Higuita NIA, Atkinson MA, Brakenridge S, Fung M, Messer W; IMPACC Network; Salehi-Rad R, Altman MC, Becker PM, Bosinger SE, Eckalbar W, Hoch A, Doni Jayavelu N, Kim-Schulze S, Jenkins M, Kleinstein SH, Krammer F, Maecker HT, Ozonoff A, Diray-Arce J, Shaw A, Baden L, Levy O, Reed EF, Langelier CR. Pickering H, et al. Nat Commun. 2025 Jan 10;16(1):586. doi: 10.1038/s41467-025-55823-z. Nat Commun. 2025. PMID: 39794319 Free PMC article.
RAGE is a key regulator of ductular reaction-mediated fibrosis during cholestasis.
Lam WM, Gabernet G, Poth T, Sator-Schmitt M, Oquendo MB, Kast B, Lohr S, de Ponti A, Weiß L, Schneider M, Helm D, Müller-Decker K, Schirmacher P, Heikenwälder M, Klingmüller U, Schneller D, Geisler F, Nahnsen S, Angel P. Lam WM, et al. Among authors: gabernet g. EMBO Rep. 2025 Jan 2. doi: 10.1038/s44319-024-00356-7. Online ahead of print. EMBO Rep. 2025. PMID: 39747668 Free article.
In-depth analysis of serum antibodies against Epstein-Barr virus lifecycle proteins, and EBNA1, ANO2, GlialCAM and CRYAB peptides in patients with multiple sclerosis.
Vasilenko N, Tieck MP, Michel T, Schembecker S, Schwarz P, Guenther A, Ruschil C, Poli S, Ziemann U, Giede-Jeppe A, Gabernet G, Dulovic A, Kowarik MC. Vasilenko N, et al. Among authors: gabernet g. Front Immunol. 2024 Dec 17;15:1487523. doi: 10.3389/fimmu.2024.1487523. eCollection 2024. Front Immunol. 2024. PMID: 39742283 Free PMC article.
NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling.
Hanssen F, Gabernet G, Bäuerle F, Stöcker B, Wiegand F, Smith NH, Mertes C, Neogi AG, Brandhoff L, Ossowski A, Altmueller J, Becker K, Petzold A, Sturm M, Stöcker T, Sivalingam S, Brand F, Schmidt A, Buness A, Probst AJ, Motameny S, Köster J. Hanssen F, et al. Among authors: gabernet g. F1000Res. 2024 Sep 12;12:1125. doi: 10.12688/f1000research.140344.1. eCollection 2023. F1000Res. 2024. PMID: 39345270 Free PMC article.
nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
Gabernet G, Marquez S, Bjornson R, Peltzer A, Meng H, Aron E, Lee NY, Jensen CG, Ladd D, Polster M, Hanssen F, Heumos S; nf-core community; Yaari G, Kowarik MC, Nahnsen S, Kleinstein SH. Gabernet G, et al. PLoS Comput Biol. 2024 Jul 26;20(7):e1012265. doi: 10.1371/journal.pcbi.1012265. eCollection 2024 Jul. PLoS Comput Biol. 2024. PMID: 39058741 Free PMC article.
PI3Kγ in B cells promotes antibody responses and generation of antibody-secreting cells.
Lanahan SM, Yang L, Jones KM, Qi Z, Cabrera EC, Cominsky LY, Ramaswamy A, Barmada A, Gabernet G, Uthaya Kumar DB, Xu L, Shan P, Wymann MP, Kleinstein SH, Rao VK, Mustillo P, Romberg N, Abraham RS, Lucas CL. Lanahan SM, et al. Among authors: gabernet g. Nat Immunol. 2024 Aug;25(8):1422-1431. doi: 10.1038/s41590-024-01890-1. Epub 2024 Jul 3. Nat Immunol. 2024. PMID: 38961274
nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
Gabernet G, Marquez S, Bjornson R, Peltzer A, Meng H, Aron E, Lee NY, Jensen C, Ladd D, Hanssen F, Heumos S; nf-core community; Yaari G, Kowarik MC, Nahnsen S, Kleinstein SH. Gabernet G, et al. bioRxiv [Preprint]. 2024 Jan 28:2024.01.18.576147. doi: 10.1101/2024.01.18.576147. bioRxiv. 2024. Update in: PLoS Comput Biol. 2024 Jul 26;20(7):e1012265. doi: 10.1371/journal.pcbi.1012265 PMID: 38293151 Free PMC article. Updated. Preprint.
35 results