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Canonical AREs are tumor suppressive regulatory elements in the prostate.
Augello MA, Chen X, Liu D, Lin K, Hakansson A, Sjöström M, Khani F, Deonarine LD, Liu Y, Travascio-Green J, Wu J, Loda M, Feng FY, Robinson BD, Davicioni E, Sboner A, Barbieri CE. Augello MA, et al. Among authors: liu y, liu d. bioRxiv [Preprint]. 2024 Feb 27:2024.02.23.581466. doi: 10.1101/2024.02.23.581466. bioRxiv. 2024. Update in: Nat Commun. 2024 Dec 13;15(1):10675. doi: 10.1038/s41467-024-53734-z PMID: 38464162 Free PMC article. Updated. Preprint.
Nuclear Localization of Argonaute is affected by Cell Density and May Relieve Repression by microRNAs.
Johnson KC, Kilikevicius A, Hofman C, Hu J, Liu Y, Aguilar S, Graswich J, Han Y, Wang T, Westcott JM, Brekken RA, Peng L, Karagkounis G, Corey DR. Johnson KC, et al. Among authors: liu y. bioRxiv [Preprint]. 2023 Jul 12:2023.07.07.548119. doi: 10.1101/2023.07.07.548119. bioRxiv. 2023. Update in: Nucleic Acids Res. 2024 Feb 28;52(4):1930-1952. doi: 10.1093/nar/gkad1155 PMID: 37461596 Free PMC article. Updated. Preprint.
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression.
Mortenson KL, Dawes C, Wilson ER, Patchen NE, Johnson HE, Gertz J, Bailey SD, Liu Y, Varley KE, Zhang X. Mortenson KL, et al. Among authors: liu y. bioRxiv [Preprint]. 2024 Jun 21:2024.01.23.576965. doi: 10.1101/2024.01.23.576965. bioRxiv. 2024. Update in: Nat Commun. 2024 Jul 20;15(1):6130. doi: 10.1038/s41467-024-50387-w PMID: 38328209 Free PMC article. Updated. Preprint.
Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues.
Bai Z, Zhang D, Gao Y, Tao B, Bao S, Enninful A, Zhang D, Su G, Tian X, Zhang N, Xiao Y, Liu Y, Gerstein M, Li M, Xing Y, Lu J, Xu ML, Fan R. Bai Z, et al. Among authors: liu y. bioRxiv [Preprint]. 2024 Feb 8:2024.02.06.579143. doi: 10.1101/2024.02.06.579143. bioRxiv. 2024. Update in: Cell. 2024 Nov 14;187(23):6760-6779.e24. doi: 10.1016/j.cell.2024.09.001 PMID: 38370833 Free PMC article. Updated. Preprint.
Diversity of ancestral brainstem noradrenergic neurons across species and multiple biological factors.
Kelberman MA, Rodberg E, Arabzadeh E, Bair-Marshall CJ, Berridge CW, Berrocoso E, Breton-Provencher V, Chandler DJ, Che A, Davy O, Devilbiss DM, Downs AM, Drummond G, Dvorkin R, Fazlali Z, Froemke RC, Glennon E, Gold JI, Ito H, Jiang X, Johansen JP, Kaye AP, Kim JR, Kuo CC, Liu RJ, Liu Y, Llorca-Torralba M, McCall JG, McElligott ZA, McKinney AM, Miguelez C, Min MY, Nowlan AC, Omrani M, Poe GR, Pickering AE, Ranjbar-Slamloo Y, Razquin J, Rodenkirch C, Sales AC, Satyasambit R, Shea SD, Sur M, Tkaczynski JA, Torres-Sanchez S, Uematsu A, Vazquez CR, Vreven A, Wang Q, Waterhouse BD, Yang HW, Yang JH, Zhao L, Zouridis IS, Weinshenker D, Vazey E, Totah NK. Kelberman MA, et al. Among authors: liu y, liu rj. bioRxiv [Preprint]. 2024 Oct 16:2024.10.14.618224. doi: 10.1101/2024.10.14.618224. bioRxiv. 2024. PMID: 39464004 Free PMC article. Preprint.
Fasting is required for many of the benefits of calorie restriction in the 3xTg mouse model of Alzheimer's disease.
Babygirija R, Han JH, Sonsalla MM, Matoska R, Calubag MF, Green CL, Tobon A, Yeh CY, Vertein D, Schlorf S, Illiano J, Liu Y, Grunow I, Rigby MJ, Puglielli L, Harris DA, Denu JM, Lamming DW. Babygirija R, et al. Among authors: liu y. bioRxiv [Preprint]. 2024 Sep 24:2024.09.19.613904. doi: 10.1101/2024.09.19.613904. bioRxiv. 2024. PMID: 39386545 Free PMC article. Preprint.
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