Lees JA - Search Results

1

Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis.

Xie O, Morris JM, Hayes AJ, Towers RJ, Jespersen MG, Lees JA, Ben Zakour NL, Berking O, Baines SL, Carter GP, Tonkin-Hill G, Schrieber L, McIntyre L, Lacey JA, James TB, Sriprakash KS, Beatson SA, Hasegawa T, Giffard P, Steer AC, Batzloff MR, Beall BW, Pinho MD, Ramirez M, Bessen DE, Dougan G, Bentley SD, Walker MJ, Currie BJ, Tong SYC, McMillan DJ, Davies MR. Xie O, et al. Among authors: lees ja. Nat Commun. 2024 Mar 13;15(1):2286. doi: 10.1038/s41467-024-46530-2. Nat Commun. 2024. PMID: 38480728 Free PMC article.

2

Bacterial GWAS: not just gilding the lily.

Lees JA, Bentley SD. Lees JA, et al. Nat Rev Microbiol. 2016 Jul;14(7):406. doi: 10.1038/nrmicro.2016.82. Epub 2016 May 31. Nat Rev Microbiol. 2016. PMID: 27241043 No abstract available.

3

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes.

Lees JA, Vehkala M, Välimäki N, Harris SR, Chewapreecha C, Croucher NJ, Marttinen P, Davies MR, Steer AC, Tong SY, Honkela A, Parkhill J, Bentley SD, Corander J. Lees JA, et al. Nat Commun. 2016 Sep 16;7:12797. doi: 10.1038/ncomms12797. Nat Commun. 2016. PMID: 27633831 Free PMC article.

4

Within-Host Sampling of a Natural Population Shows Signs of Selection on Pde1 during Bacterial Meningitis.

Lees JA, Brouwer M, van der Ende A, Parkhill J, van de Beek D, Bentley SD. Lees JA, et al. Infect Immun. 2017 Feb 23;85(3):e01061-16. doi: 10.1128/IAI.01061-16. Print 2017 Mar. Infect Immun. 2017. PMID: 28232521 Free PMC article. No abstract available.

5

Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis.

Lees JA, Kremer PHC, Manso AS, Croucher NJ, Ferwerda B, Serón MV, Oggioni MR, Parkhill J, Brouwer MC, van der Ende A, van de Beek D, Bentley SD. Lees JA, et al. Microb Genom. 2017 Jan 31;3(1):e000103. doi: 10.1099/mgen.0.000103. eCollection 2017 Jan. Microb Genom. 2017. PMID: 28348877 Free PMC article.

6

Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration.

Lees JA, Croucher NJ, Goldblatt D, Nosten F, Parkhill J, Turner C, Turner P, Bentley SD. Lees JA, et al. Elife. 2017 Jul 25;6:e26255. doi: 10.7554/eLife.26255. Elife. 2017. PMID: 28742023 Free PMC article.

7

Stronger together.

Lees JA, Tonkin-Hill G, Bentley SD. Lees JA, et al. Nat Rev Microbiol. 2017 Sep;15(9):516. doi: 10.1038/nrmicro.2017.95. Epub 2017 Aug 7. Nat Rev Microbiol. 2017. PMID: 28781366 No abstract available.

8

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study.

Lees JA, Kendall M, Parkhill J, Colijn C, Bentley SD, Harris SR. Lees JA, et al. Wellcome Open Res. 2018 Mar 23;3:33. doi: 10.12688/wellcomeopenres.14265.2. eCollection 2018. Wellcome Open Res. 2018. PMID: 29774245 Free PMC article.

9

SuperDCA for genome-wide epistasis analysis.

Puranen S, Pesonen M, Pensar J, Xu YY, Lees JA, Bentley SD, Croucher NJ, Corander J. Puranen S, et al. Among authors: lees ja. Microb Genom. 2018 Jun;4(6):e000184. doi: 10.1099/mgen.0.000184. Epub 2018 May 29. Microb Genom. 2018. PMID: 29813016 Free PMC article.

10

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS.

Tonkin-Hill G, Lees JA, Bentley SD, Frost SDW, Corander J. Tonkin-Hill G, et al. Among authors: lees ja. Wellcome Open Res. 2018 Jul 30;3:93. doi: 10.12688/wellcomeopenres.14694.1. eCollection 2018. Wellcome Open Res. 2018. PMID: 30345380 Free PMC article.

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