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Page 1
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
Koren S, Bao Z, Guarracino A, Ou S, Goodwin S, Jenike KM, Lucas J, McNulty B, Park J, Rautiainen M, Rhie A, Roelofs D, Schneiders H, Vrijenhoek I, Nijbroek K, Nordesjo O, Nurk S, Vella M, Lawrence KR, Ware D, Schatz MC, Garrison E, Huang S, McCombie WR, Miga KH, Wittenberg AHJ, Phillippy AM. Koren S, et al. Among authors: schneiders h. Genome Res. 2024 Nov 20;34(11):1919-1930. doi: 10.1101/gr.279334.124. Genome Res. 2024. PMID: 39505490
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
Koren S, Bao Z, Guarracino A, Ou S, Goodwin S, Jenike KM, Lucas J, McNulty B, Park J, Rautiainen M, Rhie A, Roelofs D, Schneiders H, Vrijenhoek I, Nijbroek K, Ware D, Schatz MC, Garrison E, Huang S, McCombie WR, Miga KH, Wittenberg AHJ, Phillippy AM. Koren S, et al. Among authors: schneiders h. bioRxiv [Preprint]. 2024 Mar 19:2024.03.15.585294. doi: 10.1101/2024.03.15.585294. bioRxiv. 2024. Update in: Genome Res. 2024 Nov 20;34(11):1919-1930. doi: 10.1101/gr.279334.124 PMID: 38529488 Free PMC article. Updated. Preprint.
Segmental duplications drive the evolution of accessory regions in a major crop pathogen.
van Westerhoven AC, Aguilera-Galvez C, Nakasato-Tagami G, Shi-Kunne X, Martinez de la Parte E, Chavarro-Carrero E, Meijer HJG, Feurtey A, Maryani N, Ordóñez N, Schneiders H, Nijbroek K, Wittenberg AHJ, Hofstede R, García-Bastidas F, Sørensen A, Swennen R, Drenth A, Stukenbrock EH, Kema GHJ, Seidl MF. van Westerhoven AC, et al. Among authors: schneiders h. New Phytol. 2024 Apr;242(2):610-625. doi: 10.1111/nph.19604. Epub 2024 Feb 25. New Phytol. 2024. PMID: 38402521
The structure of the tetraploid sour cherry 'Schattenmorelle' (Prunus cerasus L.) genome reveals insights into its segmental allopolyploid nature.
Wöhner TW, Emeriewen OF, Wittenberg AHJ, Nijbroek K, Wang RP, Blom EJ, Schneiders H, Keilwagen J, Berner T, Hoff KJ, Gabriel L, Thierfeldt H, Almolla O, Barchi L, Schuster M, Lempe J, Peil A, Flachowsky H. Wöhner TW, et al. Among authors: schneiders h. Front Plant Sci. 2023 Dec 1;14:1284478. doi: 10.3389/fpls.2023.1284478. eCollection 2023. Front Plant Sci. 2023. PMID: 38107002 Free PMC article.
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi.
Gupta YK, Marcelino-Guimarães FC, Lorrain C, Farmer A, Haridas S, Ferreira EGC, Lopes-Caitar VS, Oliveira LS, Morin E, Widdison S, Cameron C, Inoue Y, Thor K, Robinson K, Drula E, Henrissat B, LaButti K, Bini AMR, Paget E, Singan V, Daum C, Dorme C, van Hoek M, Janssen A, Chandat L, Tarriotte Y, Richardson J, Melo BDVA, Wittenberg AHJ, Schneiders H, Peyrard S, Zanardo LG, Holtman VC, Coulombier-Chauvel F, Link TI, Balmer D, Müller AN, Kind S, Bohnert S, Wirtz L, Chen C, Yan M, Ng V, Gautier P, Meyer MC, Voegele RT, Liu Q, Grigoriev IV, Conrath U, Brommonschenkel SH, Loehrer M, Schaffrath U, Sirven C, Scalliet G, Duplessis S, van Esse HP. Gupta YK, et al. Among authors: schneiders h. Nat Commun. 2023 Apr 1;14(1):1835. doi: 10.1038/s41467-023-37551-4. Nat Commun. 2023. PMID: 37005409 Free PMC article.
The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads.
Wöhner TW, Emeriewen OF, Wittenberg AHJ, Schneiders H, Vrijenhoek I, Halász J, Hrotkó K, Hoff KJ, Gabriel L, Lempe J, Keilwagen J, Berner T, Schuster M, Peil A, Wünsche J, Kropop S, Flachowsky H. Wöhner TW, et al. Among authors: schneiders h. Genomics. 2021 Nov;113(6):4173-4183. doi: 10.1016/j.ygeno.2021.11.002. Epub 2021 Nov 11. Genomics. 2021. PMID: 34774678 Free article.
Generation of a 3D indexed Petunia insertion database for reverse genetics.
Vandenbussche M, Janssen A, Zethof J, van Orsouw N, Peters J, van Eijk MJ, Rijpkema AS, Schneiders H, Santhanam P, de Been M, van Tunen A, Gerats T. Vandenbussche M, et al. Among authors: schneiders h. Plant J. 2008 Jun;54(6):1105-14. doi: 10.1111/j.1365-313X.2008.03482.x. Epub 2008 Mar 13. Plant J. 2008. PMID: 18346192 Free article.
16 results