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Representations of lipid nanoparticles using large language models for transfection efficiency prediction.
Moayedpour S, Broadbent J, Riahi S, Bailey M, V Thu H, Dobchev D, Balsubramani A, N D Santos R, Kogler-Anele L, Corrochano-Navarro A, Li S, U Montoya F, Agarwal V, Bar-Joseph Z, Jager S. Moayedpour S, et al. Among authors: v thu h, agarwal v. Bioinformatics. 2024 Jul 1;40(7):btae342. doi: 10.1093/bioinformatics/btae342. Bioinformatics. 2024. PMID: 38810107 Free PMC article.
How DNA encodes the start of transcription.
Wang J, Agarwal V. Wang J, et al. Among authors: agarwal v. Science. 2024 Apr 26;384(6694):382-383. doi: 10.1126/science.adp0869. Epub 2024 Apr 25. Science. 2024. PMID: 38662850
CodonBERT large language model for mRNA vaccines.
Li S, Moayedpour S, Li R, Bailey M, Riahi S, Kogler-Anele L, Miladi M, Miner J, Pertuy F, Zheng D, Wang J, Balsubramani A, Tran K, Zacharia M, Wu M, Gu X, Clinton R, Asquith C, Skaleski J, Boeglin L, Chivukula S, Dias A, Strugnell T, Montoya FU, Agarwal V, Bar-Joseph Z, Jager S. Li S, et al. Among authors: agarwal v. Genome Res. 2024 Aug 20;34(7):1027-1035. doi: 10.1101/gr.278870.123. Genome Res. 2024. PMID: 38951026 Free PMC article.
Determinants of physical function, as measured using PROMIS PF-10a, in patients with rheumatoid arthritis: results from the international COVID-19 Vaccination in Autoimmune Diseases (COVAD) study.
Ali SS, Demetriou C, Parodis I, Tan AL, Edgar Gracia-Ramos A, Joshi M, Caballero-Uribe CV, Saha S, Lilleker JB, Nune A, Pauling JD, Wincup C, Jagtap K, Dey D, Milchert M, Distler O, Chinoy H, Agarwal V, Gupta L, Nikiphorou E; COVAD Study Group. Ali SS, et al. Among authors: agarwal v. Rheumatol Adv Pract. 2024 Dec 30;9(1):rkae154. doi: 10.1093/rap/rkae154. eCollection 2025. Rheumatol Adv Pract. 2024. PMID: 39846050 Free PMC article.
Massively parallel characterization of transcriptional regulatory elements.
Agarwal V, Inoue F, Schubach M, Penzar D, Martin BK, Dash PM, Keukeleire P, Zhang Z, Sohota A, Zhao J, Georgakopoulos-Soares I, Noble WS, Yardımcı GG, Kulakovskiy IV, Kircher M, Shendure J, Ahituv N. Agarwal V, et al. Nature. 2025 Jan 15. doi: 10.1038/s41586-024-08430-9. Online ahead of print. Nature. 2025. PMID: 39814889
1,680 results