Zhang BG - Search Results

1

ABC2A: A Straightforward and Fast Method for the Accurate Backmapping of RNA Coarse-Grained Models to All-Atom Structures.

Shi YZ, Wu H, Li SS, Li HZ, Zhang BG, Tan YL. Shi YZ, et al. Among authors: zhang bg. Molecules. 2024 Mar 11;29(6):1244. doi: 10.3390/molecules29061244. Molecules. 2024. PMID: 38542881 Free PMC article.

2

Detecting causality from short time-series data based on prediction of topologically equivalent attractors.

Zhang BG, Li W, Shi Y, Liu X, Chen L. Zhang BG, et al. BMC Syst Biol. 2017 Dec 21;11(Suppl 7):128. doi: 10.1186/s12918-017-0512-3. BMC Syst Biol. 2017. PMID: 29322924 Free PMC article.

3

3D structure stability of the HIV-1 TAR RNA in ion solutions: A coarse-grained model study.

Zhang BG, Qiu HH, Jiang J, Liu J, Shi YZ. Zhang BG, et al. J Chem Phys. 2019 Oct 28;151(16):165101. doi: 10.1063/1.5126128. J Chem Phys. 2019. PMID: 31675878

4

SS-RNN: A Strengthened Skip Algorithm for Data Classification Based on Recurrent Neural Networks.

Cao W, Shi YZ, Qiu H, Zhang B. Cao W, et al. Front Genet. 2021 Oct 13;12:746181. doi: 10.3389/fgene.2021.746181. eCollection 2021. Front Genet. 2021. PMID: 34721533 Free PMC article.

5

Ab initio predictions for 3D structure and stability of single- and double-stranded DNAs in ion solutions.

Mu ZC, Tan YL, Zhang BG, Liu J, Shi YZ. Mu ZC, et al. Among authors: zhang bg. PLoS Comput Biol. 2022 Oct 19;18(10):e1010501. doi: 10.1371/journal.pcbi.1010501. eCollection 2022 Oct. PLoS Comput Biol. 2022. PMID: 36260618 Free PMC article.

6

RNAStat: An Integrated Tool for Statistical Analysis of RNA 3D Structures.

Guo ZH, Yuan L, Tan YL, Zhang BG, Shi YZ. Guo ZH, et al. Among authors: zhang bg. Front Bioinform. 2022 Jan 11;1:809082. doi: 10.3389/fbinf.2021.809082. eCollection 2021. Front Bioinform. 2022. PMID: 36303785 Free PMC article.

7

cgRNASP: coarse-grained statistical potentials with residue separation for RNA structure evaluation.

Tan YL, Wang X, Yu S, Zhang B, Tan ZJ. Tan YL, et al. NAR Genom Bioinform. 2023 Mar 3;5(1):lqad016. doi: 10.1093/nargab/lqad016. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36879898 Free PMC article.

8

Computational Modeling of DNA 3D Structures: From Dynamics and Mechanics to Folding.

Mu ZC, Tan YL, Liu J, Zhang BG, Shi YZ. Mu ZC, et al. Among authors: zhang bg. Molecules. 2023 Jun 17;28(12):4833. doi: 10.3390/molecules28124833. Molecules. 2023. PMID: 37375388 Free PMC article. Review.

9

Transcriptional bursting dynamics in gene expression.

Zhang Q, Cao W, Wang J, Yin Y, Sun R, Tian Z, Hu Y, Tan Y, Zhang BG. Zhang Q, et al. Among authors: zhang bg. Front Genet. 2024 Sep 13;15:1451461. doi: 10.3389/fgene.2024.1451461. eCollection 2024. Front Genet. 2024. PMID: 39346775 Free PMC article. Review.

10

scGRN-Entropy: Inferring cell differentiation trajectories using single-cell data and gene regulation network-based transfer entropy.

Sun R, Cao W, Li S, Jiang J, Shi Y, Zhang B. Sun R, et al. PLoS Comput Biol. 2024 Nov 25;20(11):e1012638. doi: 10.1371/journal.pcbi.1012638. eCollection 2024 Nov. PLoS Comput Biol. 2024. PMID: 39585902 Free PMC article.

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