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Page 1
Paradigm shift in biomarker translation: a pipeline to generate clinical grade biomarker candidates from DIA-MS discovery.
Fu Q, Vegesna M, Sundararaman N, Damoc E, Arrey TN, Pashkova A, Mengesha E, Debbas P, Joung S, Li D, Cheng S, Braun J, McGovern DPB, Murray C, Xuan Y, Eyk JEV. Fu Q, et al. Among authors: arrey tn. bioRxiv [Preprint]. 2024 Mar 22:2024.03.20.586018. doi: 10.1101/2024.03.20.586018. bioRxiv. 2024. Update in: Angew Chem Int Ed Engl. 2024 Dec 20;63(52):e202409446. doi: 10.1002/anie.202409446 PMID: 38562888 Free PMC article. Updated. Preprint.
Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data Independent Acquisition.
Heil LR, Damoc E, Arrey TN, Pashkova A, Denisov E, Petzoldt J, Peterson AC, Hsu C, Searle BC, Shulman N, Riffle M, Connolly B, MacLean BX, Remes PM, Senko MW, Stewart HI, Hock C, Makarov AA, Hermanson D, Zabrouskov V, Wu CC, MacCoss MJ. Heil LR, et al. Among authors: arrey tn. bioRxiv [Preprint]. 2023 Aug 7:2023.06.03.543570. doi: 10.1101/2023.06.03.543570. bioRxiv. 2023. Update in: J Proteome Res. 2023 Oct 6;22(10):3290-3300. doi: 10.1021/acs.jproteome.3c00357 PMID: 37398334 Free PMC article. Updated. Preprint.
Protein Coronas on Functionalized Nanoparticles Enable Quantitative and Precise Large-Scale Deep Plasma Proteomics.
Huang T, Wang J, Stukalov A, Donovan MKR, Ferdosi S, Williamson L, Just S, Castro G, Cantrell LS, Elgierari E, Benz RW, Huang Y, Motamedchaboki K, Hakimi A, Arrey T, Damoc E, Kreimer S, Farokhzad OC, Batzoglou S, Siddiqui A, Van Eyk JE, Hornburg D. Huang T, et al. bioRxiv [Preprint]. 2023 Aug 29:2023.08.28.555225. doi: 10.1101/2023.08.28.555225. bioRxiv. 2023. PMID: 37693476 Free PMC article. Preprint.
Fast and Deep Phosphoproteome Analysis with the Orbitrap Astral Mass Spectrometer.
Lancaster NM, Sinitcyn P, Forny P, Peters-Clarke TM, Fecher C, Smith AJ, Shishkova E, Arrey TN, Pashkova A, Robinson ML, Arp N, Fan J, Hansen J, Galmozzi A, Serrano LR, Rojas J, Gasch AP, Westphall MS, Stewart H, Hock C, Damoc E, Pagliarini DJ, Zabrouskov V, Coon JJ. Lancaster NM, et al. Among authors: arrey tn. bioRxiv [Preprint]. 2024 May 16:2023.11.21.568149. doi: 10.1101/2023.11.21.568149. bioRxiv. 2024. Update in: Nat Commun. 2024 Aug 15;15(1):7016. doi: 10.1038/s41467-024-51274-0 PMID: 38045259 Free PMC article. Updated. Preprint.
Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition.
Guzman UH, Martinez-Val A, Ye Z, Damoc E, Arrey TN, Pashkova A, Renuse S, Denisov E, Petzoldt J, Peterson AC, Harking F, Østergaard O, Rydbirk R, Aznar S, Stewart H, Xuan Y, Hermanson D, Horning S, Hock C, Makarov A, Zabrouskov V, Olsen JV. Guzman UH, et al. Among authors: arrey tn. Nat Biotechnol. 2024 Dec;42(12):1855-1866. doi: 10.1038/s41587-023-02099-7. Epub 2024 Feb 1. Nat Biotechnol. 2024. PMID: 38302753 Free PMC article.
A Proteomics Pipeline for Generating Clinical Grade Biomarker Candidates from Data-Independent Acquisition Mass Spectrometry (DIA-MS) Discovery.
Fu Q, Vegesna M, Sundararaman N, Damoc E, Arrey TN, Pashkova A, Mengesha E, Debbas P, Joung S, Li D, Cheng S, Braun J, McGovern DPB, Murray CI, Xuan Y, Van Eyk JE. Fu Q, et al. Among authors: arrey tn. Angew Chem Int Ed Engl. 2024 Dec 20;63(52):e202409446. doi: 10.1002/anie.202409446. Epub 2024 Nov 11. Angew Chem Int Ed Engl. 2024. PMID: 39432331
Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer.
Lancaster NM, Sinitcyn P, Forny P, Peters-Clarke TM, Fecher C, Smith AJ, Shishkova E, Arrey TN, Pashkova A, Robinson ML, Arp N, Fan J, Hansen J, Galmozzi A, Serrano LR, Rojas J, Gasch AP, Westphall MS, Stewart H, Hock C, Damoc E, Pagliarini DJ, Zabrouskov V, Coon JJ. Lancaster NM, et al. Among authors: arrey tn. Nat Commun. 2024 Aug 15;15(1):7016. doi: 10.1038/s41467-024-51274-0. Nat Commun. 2024. PMID: 39147754 Free PMC article.
The One Hour Human Proteome.
Serrano LR, Peters-Clarke TM, Arrey TN, Damoc E, Robinson ML, Lancaster NM, Shishkova E, Moss C, Pashkova A, Sinitcyn P, Brademan DR, Quarmby ST, Peterson AC, Zeller M, Hermanson D, Stewart H, Hock C, Makarov A, Zabrouskov V, Coon JJ. Serrano LR, et al. Among authors: arrey tn. Mol Cell Proteomics. 2024 May;23(5):100760. doi: 10.1016/j.mcpro.2024.100760. Epub 2024 Apr 3. Mol Cell Proteomics. 2024. PMID: 38579929 Free PMC article.
Parallelized Acquisition of Orbitrap and Astral Analyzers Enables High-Throughput Quantitative Analysis.
Stewart HI, Grinfeld D, Giannakopulos A, Petzoldt J, Shanley T, Garland M, Denisov E, Peterson AC, Damoc E, Zeller M, Arrey TN, Pashkova A, Renuse S, Hakimi A, Kühn A, Biel M, Kreutzmann A, Hagedorn B, Colonius I, Schütz A, Stefes A, Dwivedi A, Mourad D, Hoek M, Reitemeier B, Cochems P, Kholomeev A, Ostermann R, Quiring G, Ochmann M, Möhring S, Wagner A, Petker A, Kanngiesser S, Wiedemeyer M, Balschun W, Hermanson D, Zabrouskov V, Makarov AA, Hock C. Stewart HI, et al. Among authors: arrey tn. Anal Chem. 2023 Oct 24;95(42):15656-15664. doi: 10.1021/acs.analchem.3c02856. Epub 2023 Oct 10. Anal Chem. 2023. PMID: 37815927 Free PMC article.
Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition.
Heil LR, Damoc E, Arrey TN, Pashkova A, Denisov E, Petzoldt J, Peterson AC, Hsu C, Searle BC, Shulman N, Riffle M, Connolly B, MacLean BX, Remes PM, Senko MW, Stewart HI, Hock C, Makarov AA, Hermanson D, Zabrouskov V, Wu CC, MacCoss MJ. Heil LR, et al. Among authors: arrey tn. J Proteome Res. 2023 Oct 6;22(10):3290-3300. doi: 10.1021/acs.jproteome.3c00357. Epub 2023 Sep 8. J Proteome Res. 2023. PMID: 37683181 Free PMC article.
30 results