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Genomic reproducibility in the bioinformatics era.
Baykal PI, Łabaj PP, Markowetz F, Schriml LM, Stekhoven DJ, Mangul S, Beerenwinkel N. Baykal PI, et al. Among authors: markowetz f. Genome Biol. 2024 Aug 9;25(1):213. doi: 10.1186/s13059-024-03343-2. Genome Biol. 2024. PMID: 39123217 Free PMC article. Review.
Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction.
Salcedo A, Tarabichi M, Buchanan A, Espiritu SMG, Zhang H, Zhu K, Ou Yang TH, Leshchiner I, Anastassiou D, Guan Y, Jang GH, Mootor MFE, Haase K, Deshwar AG, Zou W, Umar I, Dentro S, Wintersinger JA, Chiotti K, Demeulemeester J, Jolly C, Sycza L, Ko M; PCAWG Evolution and Heterogeneity Working Group; SMC-Het Participants; Wedge DC, Morris QD, Ellrott K, Van Loo P, Boutros PC. Salcedo A, et al. Nat Biotechnol. 2024 Jun 11. doi: 10.1038/s41587-024-02250-y. Online ahead of print. Nat Biotechnol. 2024. PMID: 38862616
ZMIZ1 enhances ERα-dependent expression of E2F2 in breast cancer.
Zhao W, Rose SF, Blake R, Godicelj A, Cullen AE, Stenning J, Beevors L, Gehrung M, Kumar S, Kishore K, Sawle A, Eldridge M, Giorgi FM, Bridge KS, Markowetz F, Holding AN. Zhao W, et al. Among authors: markowetz f. J Mol Endocrinol. 2024 Apr 25;73(1):e230133. doi: 10.1530/JME-23-0133. Print 2024 Jul 1. J Mol Endocrinol. 2024. PMID: 38564418 Free PMC article.
scAbsolute: measuring single-cell ploidy and replication status.
Schneider MP, Cullen AE, Pangonyte J, Skelton J, Major H, Van Oudenhove E, Garcia MJ, Chaves Urbano B, Piskorz AM, Brenton JD, Macintyre G, Markowetz F. Schneider MP, et al. Among authors: markowetz f. Genome Biol. 2024 Mar 4;25(1):62. doi: 10.1186/s13059-024-03204-y. Genome Biol. 2024. PMID: 38438920 Free PMC article.
Integrated radiogenomics models predict response to neoadjuvant chemotherapy in high grade serous ovarian cancer.
Crispin-Ortuzar M, Woitek R, Reinius MAV, Moore E, Beer L, Bura V, Rundo L, McCague C, Ursprung S, Escudero Sanchez L, Martin-Gonzalez P, Mouliere F, Chandrananda D, Morris J, Goranova T, Piskorz AM, Singh N, Sahdev A, Pintican R, Zerunian M, Rosenfeld N, Addley H, Jimenez-Linan M, Markowetz F, Sala E, Brenton JD. Crispin-Ortuzar M, et al. Among authors: markowetz f. Nat Commun. 2023 Oct 24;14(1):6756. doi: 10.1038/s41467-023-41820-7. Nat Commun. 2023. PMID: 37875466 Free PMC article.
Author Correction: The copy number and mutational landscape of recurrent ovarian high-grade serous carcinoma.
Smith P, Bradley T, Gavarró LM, Goranova T, Ennis DP, Mirza HB, De Silva D, Piskorz AM, Sauer CM, Al-Khalidi S, Funingana IG, Reinius MAV, Giannone G, Lewsley LA, Stobo J, McQueen J, Bryson G, Eldridge M; BriTROC Investigators; Macintyre G, Markowetz F, Brenton JD, McNeish IA. Smith P, et al. Among authors: markowetz f. Nat Commun. 2023 Sep 26;14(1):5992. doi: 10.1038/s41467-023-41611-0. Nat Commun. 2023. PMID: 37752102 Free PMC article. No abstract available.
The copy number and mutational landscape of recurrent ovarian high-grade serous carcinoma.
Smith P, Bradley T, Gavarró LM, Goranova T, Ennis DP, Mirza HB, De Silva D, Piskorz AM, Sauer CM, Al-Khalidi S, Funingana IG, Reinius MAV, Giannone G, Lewsley LA, Stobo J, McQueen J, Bryson G, Eldridge M; BriTROC Investigators; Macintyre G, Markowetz F, Brenton JD, McNeish IA. Smith P, et al. Among authors: markowetz f. Nat Commun. 2023 Jul 20;14(1):4387. doi: 10.1038/s41467-023-39867-7. Nat Commun. 2023. PMID: 37474499 Free PMC article.
147 results