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A multi-organ map of the human immune system across age, sex and ethnicity.
Mangiola S, Milton M, Ranathunga N, Li-Wai-Suen C, Odainic A, Yang E, Hutchison W, Garnham A, Iskander J, Pal B, Yadav V, Rossello J, Carey VJ, Morgan M, Bedoui S, Kallies A, Papenfuss AT. Mangiola S, et al. bioRxiv [Preprint]. 2024 Apr 29:2023.06.08.542671. doi: 10.1101/2023.06.08.542671. bioRxiv. 2024. PMID: 38746418 Free PMC article. Preprint.
Interfacing Seurat with the R tidy universe.
Mangiola S, Doyle MA, Papenfuss AT. Mangiola S, et al. Bioinformatics. 2021 Nov 18;37(22):4100-4107. doi: 10.1093/bioinformatics/btab404. Bioinformatics. 2021. PMID: 34028547 Free PMC article.
The tidyomics ecosystem: Enhancing omic data analyses.
Hutchison WJ, Keyes TJ; tidyomics Consortium; Crowell HL, Serizay J, Soneson C, Davis ES, Sato N, Moses L, Tarlinton B, Nahid AA, Kosmac M, Clayssen Q, Yuan V, Mu W, Park JE, Mamede I, Ryu MH, Axisa PP, Paiz P, Poon CL, Tang M, Gottardo R, Morgan M, Lee S, Lawrence M, Hicks SC, Nolan GP, Davis KL, Papenfuss AT, Love MI, Mangiola S. Hutchison WJ, et al. Among authors: mangiola s. bioRxiv [Preprint]. 2024 May 22:2023.09.10.557072. doi: 10.1101/2023.09.10.557072. bioRxiv. 2024. Update in: Nat Methods. 2024 Jul;21(7):1166-1170. doi: 10.1038/s41592-024-02299-2 PMID: 38826347 Free PMC article. Updated. Preprint.
The tidyomics ecosystem: enhancing omic data analyses.
Hutchison WJ, Keyes TJ; tidyomics Consortium; Crowell HL, Serizay J, Soneson C, Davis ES, Sato N, Moses L, Tarlinton B, Nahid AA, Kosmac M, Clayssen Q, Yuan V, Mu W, Park JE, Mamede I, Ryu MH, Axisa PP, Paiz P, Poon CL, Tang M, Gottardo R, Morgan M, Lee S, Lawrence M, Hicks SC, Nolan GP, Davis KL, Papenfuss AT, Love MI, Mangiola S. Hutchison WJ, et al. Among authors: mangiola s. Nat Methods. 2024 Jul;21(7):1166-1170. doi: 10.1038/s41592-024-02299-2. Epub 2024 Jun 14. Nat Methods. 2024. PMID: 38877315
Transcriptome sequencing and multi-plex imaging of prostate cancer microenvironment reveals a dominant role for monocytic cells in progression.
Mangiola S, McCoy P, Modrak M, Souza-Fonseca-Guimaraes F, Blashki D, Stuchbery R, Keam SP, Kerger M, Chow K, Nasa C, Le Page M, Lister N, Monard S, Peters J, Dundee P, Williams SG, Costello AJ, Neeson PJ, Pal B, Huntington ND, Corcoran NM, Papenfuss AT, Hovens CM. Mangiola S, et al. BMC Cancer. 2021 Jul 22;21(1):846. doi: 10.1186/s12885-021-08529-6. BMC Cancer. 2021. PMID: 34294073 Free PMC article.
46 results