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Page 1
Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences.
Tran-Kiem C, Paredes MI, Perofsky AC, Frisbie LA, Xie H, Kong K, Weixler A, Greninger AL, Roychoudhury P, Peterson JM, Delgado A, Halstead H, MacKellar D, Dykema P, Gamboa L, Frazar CD, Ryke E, Stone J, Reinhart D, Starita L, Thibodeau A, Yun C, Aragona F, Black A, Viboud C, Bedford T. Tran-Kiem C, et al. Among authors: gamboa l. medRxiv [Preprint]. 2024 Nov 7:2024.05.24.24307811. doi: 10.1101/2024.05.24.24307811. medRxiv. 2024. PMID: 38826243 Free PMC article. Preprint.
Associations between SARS-CoV-2 variants and risk of COVID-19 hospitalization among confirmed cases in Washington State: a retrospective cohort study.
Paredes MI, Lunn SM, Famulare M, Frisbie LA, Painter I, Burstein R, Roychoudhury P, Xie H, Mohamed Bakhash SA, Perez R, Lukes M, Ellis S, Sathees S, Mathias PC, Greninger A, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, McDermot E, Truong M, Nickerson DA, Bates DL, Hartman ME, Haugen E, Nguyen TN, Richards JD, Rodriguez JL, Stamatoyannopoulos JA, Thorland E, Melly G, Dykema PE, MacKellar DC, Gray HK, Singh A, Peterson JM, Russell D, Torres LM, Lindquist S, Bedford T, Allen KJ, Oltean HN. Paredes MI, et al. Among authors: gamboa l. medRxiv [Preprint]. 2022 Feb 16:2021.09.29.21264272. doi: 10.1101/2021.09.29.21264272. medRxiv. 2022. Update in: Clin Infect Dis. 2022 Aug 24;75(1):e536-e544. doi: 10.1093/cid/ciac279 PMID: 34729567 Free PMC article. Updated. Preprint.
Interactions among 17 respiratory pathogens: a cross-sectional study using clinical and community surveillance data.
Burstein R, Althouse BM, Adler A, Akullian A, Brandstetter E, Cho S, Emanuels A, Fay K, Gamboa L, Han P, Huden K, Ilcisin M, Izzo M, Jackson ML, Kim AE, Kimball L, Lacombe K, Lee J, Logue JK, Rogers J, Chung E, Sibley TR, Van Raay K, Wenger E, Wolf CR, Boeckh M, Chu H, Duchin J, Rieder M, Shendure J, Starita LM, Viboud C, Bedford T, Englund JA, Famulare M. Burstein R, et al. Among authors: gamboa l. medRxiv [Preprint]. 2022 Feb 6:2022.02.04.22270474. doi: 10.1101/2022.02.04.22270474. medRxiv. 2022. PMID: 35169816 Free PMC article. Preprint.
Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Mohamed Bakhash SA, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: gamboa l. medRxiv [Preprint]. 2022 Dec 16:2022.12.15.22283536. doi: 10.1101/2022.12.15.22283536. medRxiv. 2022. Update in: PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117 PMID: 36561171 Free PMC article. Updated. Preprint.
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Bakhash SAM, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: gamboa l. PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. eCollection 2024 Mar. PLoS Pathog. 2024. PMID: 38530853 Free PMC article.
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years.
Perofsky AC, Hansen CL, Burstein R, Boyle S, Prentice R, Marshall C, Reinhart D, Capodanno B, Truong M, Schwabe-Fry K, Kuchta K, Pfau B, Acker Z, Lee J, Sibley TR, McDermot E, Rodriguez-Salas L, Stone J, Gamboa L, Han PD, Adler A, Waghmare A, Jackson ML, Famulare M, Shendure J, Bedford T, Chu HY, Englund JA, Starita LM, Viboud C. Perofsky AC, et al. Among authors: gamboa l. Nat Commun. 2024 May 16;15(1):4164. doi: 10.1038/s41467-024-48528-2. Nat Commun. 2024. PMID: 38755171 Free PMC article.
Clinical and Genomic Epidemiology of Coxsackievirus A21 and Enterovirus D68 in Homeless Shelters, King County, Washington, USA, 2019-2021.
Cox SN, Casto AM, Franko NM, Chow EJ, Han PD, Gamboa L, Pfau B, Xie H, Kong K, Sereewit J, Rolfes MA, Mosites E, Uyeki TM, Greninger AL, Carone M, Shim MM, Bedford T, Shendure J, Boeckh M, Englund JA, Starita LM, Roychoudhury P, Chu HY. Cox SN, et al. Among authors: gamboa l. Emerg Infect Dis. 2024 Nov;30(11):2250-2260. doi: 10.3201/eid3011.240687. Emerg Infect Dis. 2024. PMID: 39447143 Free PMC article.
SwabExpress: An end-to-end protocol for extraction-free COVID-19 testing.
Srivatsan S, Heidl S, Pfau B, Martin BK, Han PD, Zhong W, van Raay K, McDermot E, Opsahl J, Gamboa L, Smith N, Truong M, Cho S, Barrow KA, Rich LM, Stone J, Wolf CR, McCulloch DJ, Kim AE, Brandstetter E, Sohlberg SL, Ilcisin M, Geyer RE, Chen W, Gehring J; Seattle Flu Study Investigators; Kosuri S, Bedford T, Rieder MJ, Nickerson DA, Chu HY, Konnick EQ, Debley JS, Shendure J, Lockwood CM, Starita LM. Srivatsan S, et al. Among authors: gamboa l. bioRxiv [Preprint]. 2021 Apr 29:2020.04.22.056283. doi: 10.1101/2020.04.22.056283. bioRxiv. 2021. Update in: Clin Chem. 2021 Dec 30;68(1):143-152. doi: 10.1093/clinchem/hvab132 PMID: 32511368 Free PMC article. Updated. Preprint.
Characterizing Long COVID in Children and Adolescents.
Gross RS, Thaweethai T, Kleinman LC, Snowden JN, Rosenzweig EB, Milner JD, Tantisira KG, Rhee KE, Jernigan TL, Kinser PA, Salisbury AL, Warburton D, Mohandas S, Wood JC, Newburger JW, Truong DT, Flaherman VJ, Metz TD, Karlson EW, Chibnik LB, Pant DB, Krishnamoorthy A, Gallagher R, Lamendola-Essel MF, Hasson DC, Katz SD, Yin S, Dreyer BP, Carmilani M, Coombs K, Fitzgerald ML, Güthe N, Hornig M, Letts RJ, Peddie AK, Taylor BD, Balaraman V, Bogie A, Bukulmez H, Dozor AJ, Eckrich D, Elliott AJ, Evans DN, Farkas JS, Faustino EVS, Fischer L, Gaur S, Harahsheh AS, Hasan UN, Hsia DS, Huerta-Montañez G, Hummel KD, Kadish MP, Kaelber DC, Krishnan S, Kosut JS, Larrabee J, Lim PPC, Michelow IC, Oliveira CR, Raissy H, Rosario-Pabon Z, Ross JL, Sato AI, Stevenson MD, Talavera-Barber MM, Teufel RJ, Weakley KE, Zimmerman E, Bind MC, Chan J, Guan Z, Morse RE, Reeder HT, Akshoomoff N, Aschner JL, Bhattacharjee R, Cottrell LA, Cowan K, D'Sa VA, Fiks AG, Gennaro ML, Irby K, Khare M, Guttierrez JL, McCulloh RJ, Narang S, Ness-Cochinwala M, Nolan S, Palumbo P, Ryu J, Salazar JC, Selvarangan R, Stein CR, Werzberger A, Zempsky WT, Aupperle R, Baker FC, Banich MT, Barch DM, Baskin-Sommers A, Bjork JM, Boo… See abstract for full author list ➔ Gross RS, et al. JAMA. 2024 Aug 21;332(14):1174-88. doi: 10.1001/jama.2024.12747. Online ahead of print. JAMA. 2024. PMID: 39196964
61 results