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Robust Prediction of Relative Binding Energies for Protein-Protein Complex Mutations Using Free Energy Perturbation Calculations.
Sampson JM, Cannon DA, Duan J, Epstein JCK, Sergeeva AP, Katsamba PS, Mannepalli SM, Bahna FA, Adihou H, Guéret SM, Gopalakrishnan R, Geschwindner S, Rees DG, Sigurdardottir A, Wilkinson T, Dodd RB, De Maria L, Mobarec JC, Shapiro L, Honig B, Buchanan A, Friesner RA, Wang L. Sampson JM, et al. Among authors: honig b. J Mol Biol. 2024 Aug 15;436(16):168640. doi: 10.1016/j.jmb.2024.168640. Epub 2024 Jun 4. J Mol Biol. 2024. PMID: 38844044
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis.
Rosenberger G, Li W, Turunen M, He J, Subramaniam PS, Pampou S, Griffin AT, Karan C, Kerwin P, Murray D, Honig B, Liu Y, Califano A. Rosenberger G, et al. Among authors: honig b. bioRxiv [Preprint]. 2023 Feb 16:2023.02.15.528736. doi: 10.1101/2023.02.15.528736. bioRxiv. 2023. Update in: Nat Commun. 2024 May 9;15(1):3909. doi: 10.1038/s41467-024-47957-3 PMID: 36824919 Free PMC article. Updated. Preprint.
Cis inhibition of co-expressed DIPs and Dprs shapes neural development.
Morano NC, Lopez DH, Meltzer H, Sergeeva AP, Katsamba PS, Rostam KD, Gupta HP, Becker JE, Bornstein B, Cosmanescu F, Schuldiner O, Honig B, Mann RS, Shapiro L. Morano NC, et al. Among authors: honig b. bioRxiv [Preprint]. 2024 Jun 6:2024.03.04.583391. doi: 10.1101/2024.03.04.583391. bioRxiv. 2024. PMID: 38895375 Free PMC article. Preprint.
Developing national cancer survivorship standards to inform quality of care in the United States using a consensus approach.
Mollica MA, McWhirter G, Tonorezos E, Fenderson J, Freyer DR, Jefford M, Luevano CJ, Mullett T, Nasso SF, Schilling E, Passero VA; National Cancer Survivorship Standards Subject Matter Expert Group. Mollica MA, et al. J Cancer Surviv. 2024 Aug;18(4):1190-1199. doi: 10.1007/s11764-024-01602-6. Epub 2024 May 13. J Cancer Surviv. 2024. PMID: 38739299 Free PMC article.
Robust prediction of relative binding energies for protein-protein complex mutations using free energy perturbation calculations.
Sampson JM, Cannon DA, Duan J, Epstein JCK, Sergeeva AP, Katsamba PS, Mannepalli SM, Bahna FA, Adihou H, Guéret SM, Gopalakrishnan R, Geschwindner S, Rees DG, Sigurdardottir A, Wilkinson T, Dodd RB, De Maria L, Mobarec JC, Shapiro L, Honig B, Buchanan A, Friesner RA, Wang L. Sampson JM, et al. Among authors: honig b. bioRxiv [Preprint]. 2024 Apr 24:2024.04.22.590325. doi: 10.1101/2024.04.22.590325. bioRxiv. 2024. Update in: J Mol Biol. 2024 Aug 15;436(16):168640. doi: 10.1016/j.jmb.2024.168640 PMID: 38712280 Free PMC article. Updated. Preprint.
311 results