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The Applied Genomics Development Strategy by the Croatian Academy of Sciences and Arts paves the way for the future development of applied genomics in Croatia.
Sedlić F, Sertić J, Markotić A, Primorac D, Slavica A, Zibar L, Vlahoviček K, Kušec V, Barić I, Paar V, Borovečki F, Žmak L, Kurolt IC, Canki-Klain N, Roksandić S, Rinčić I, Jurić H, Škaro V, Marjanović D, Projić P, Primorac D, Starčević A, Vujaklija D, Šikić M, Križanović K, Gamulin S. Sedlić F, et al. Among authors: sikic m. Croat Med J. 2024 Jun 13;65(3):297-302. doi: 10.3325/cmj.2024.65.297. Croat Med J. 2024. PMID: 38868976 Free PMC article. No abstract available.
SW#-GPU-enabled exact alignments on genome scale.
Korpar M, Šikic M. Korpar M, et al. Among authors: sikic m. Bioinformatics. 2013 Oct 1;29(19):2494-5. doi: 10.1093/bioinformatics/btt410. Epub 2013 Jul 17. Bioinformatics. 2013. PMID: 23864730 Free PMC article.
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.
Bertrand D, Shaw J, Kalathiyappan M, Ng AHQ, Kumar MS, Li C, Dvornicic M, Soldo JP, Koh JY, Tong C, Ng OT, Barkham T, Young B, Marimuthu K, Chng KR, Sikic M, Nagarajan N. Bertrand D, et al. Among authors: sikic m. Nat Biotechnol. 2019 Aug;37(8):937-944. doi: 10.1038/s41587-019-0191-2. Epub 2019 Jul 29. Nat Biotechnol. 2019. PMID: 31359005
Geometric deep learning framework for de novo genome assembly.
Vrček L, Bresson X, Laurent T, Schmitz M, Kawaguchi K, Šikić M. Vrček L, et al. Among authors: sikic m. Genome Res. 2024 Oct 29:gr.279307.124. doi: 10.1101/gr.279307.124. Online ahead of print. Genome Res. 2024. PMID: 39472021
Direct identification of A-to-I editing sites with nanopore native RNA sequencing.
Nguyen TA, Heng JWJ, Kaewsapsak P, Kok EPL, Stanojević D, Liu H, Cardilla A, Praditya A, Yi Z, Lin M, Aw JGA, Ho YY, Peh KLE, Wang Y, Zhong Q, Heraud-Farlow J, Xue S, Reversade B, Walkley C, Ho YS, Šikić M, Wan Y, Tan MH. Nguyen TA, et al. Among authors: sikic m. Nat Methods. 2022 Jul;19(7):833-844. doi: 10.1038/s41592-022-01513-3. Epub 2022 Jun 13. Nat Methods. 2022. PMID: 35697834
ExoLocator--an online view into genetic makeup of vertebrate proteins.
Khoo AA, Ogrizek-Tomas M, Bulovic A, Korpar M, Gürler E, Slijepcevic I, Šikic M, Mihalek I. Khoo AA, et al. Among authors: sikic m. Nucleic Acids Res. 2014 Jan;42(Database issue):D879-81. doi: 10.1093/nar/gkt1164. Epub 2013 Nov 23. Nucleic Acids Res. 2014. PMID: 24271393 Free PMC article.
Time- and memory-efficient genome assembly with Raven.
Vaser R, Šikić M. Vaser R, et al. Among authors: sikic m. Nat Comput Sci. 2021 May;1(5):332-336. doi: 10.1038/s43588-021-00073-4. Epub 2021 May 20. Nat Comput Sci. 2021. PMID: 38217213
Large-scale functional organization of long-range chromatin interaction networks.
Sandhu KS, Li G, Poh HM, Quek YL, Sia YY, Peh SQ, Mulawadi FH, Lim J, Sikic M, Menghi F, Thalamuthu A, Sung WK, Ruan X, Fullwood MJ, Liu E, Csermely P, Ruan Y. Sandhu KS, et al. Among authors: sikic m. Cell Rep. 2012 Nov 29;2(5):1207-19. doi: 10.1016/j.celrep.2012.09.022. Epub 2012 Oct 25. Cell Rep. 2012. PMID: 23103170 Free PMC article.
36 results