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Page 1
Towards a standard benchmark for variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework.
Bridges Y, de Souza V, Cortes KG, Haendel M, Harris NL, Korn DR, Marinakis NM, Matentzoglu N, McLaughlin JA, Mungall CJ, Osumi-Sutherland D, Robinson PN, Smedley D, Jacobsen JO. Bridges Y, et al. Among authors: korn dr. bioRxiv [Preprint]. 2024 Jun 16:2024.06.13.598672. doi: 10.1101/2024.06.13.598672. bioRxiv. 2024. PMID: 38915571 Free PMC article. Preprint.
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.
Unni DR, Moxon SAT, Bada M, Brush M, Bruskiewich R, Caufield JH, Clemons PA, Dancik V, Dumontier M, Fecho K, Glusman G, Hadlock JJ, Harris NL, Joshi A, Putman T, Qin G, Ramsey SA, Shefchek KA, Solbrig H, Soman K, Thessen AE, Haendel MA, Bizon C, Mungall CJ; Biomedical Data Translator Consortium. Unni DR, et al. Clin Transl Sci. 2022 Aug;15(8):1848-1855. doi: 10.1111/cts.13302. Epub 2022 Jun 6. Clin Transl Sci. 2022. PMID: 36125173 Free PMC article. Review.
Progress toward a universal biomedical data translator.
Fecho K, Thessen AE, Baranzini SE, Bizon C, Hadlock JJ, Huang S, Roper RT, Southall N, Ta C, Watkins PB, Williams MD, Xu H, Byrd W, Dančík V, Duby MP, Dumontier M, Glusman G, Harris NL, Hinderer EW, Hyde G, Johs A, Su AI, Qin G, Zhu Q; Biomedical Data Translator Consortium. Fecho K, et al. Clin Transl Sci. 2022 Aug;15(8):1838-1847. doi: 10.1111/cts.13301. Epub 2022 Jun 6. Clin Transl Sci. 2022. PMID: 35611543 Free PMC article. Review.
Small Molecule Antiviral Compound Collection (SMACC): a database to support the discovery of broad-spectrum antiviral drug molecules.
Martin HJ, Melo-Filho CC, Korn D, Eastman RT, Rai G, Simeonov A, Zakharov AV, Muratov E, Tropsha A. Martin HJ, et al. bioRxiv [Preprint]. 2022 Jul 11:2022.07.09.499397. doi: 10.1101/2022.07.09.499397. bioRxiv. 2022. Update in: Antiviral Res. 2023 Sep;217:105620. doi: 10.1016/j.antiviral.2023.105620 PMID: 35860225 Free PMC article. Updated. Preprint.
Integrated approach to elucidate metal-implant related adverse outcome pathways.
Beasley JT, Korn DR, Popov KI, Dumproff RL, Sessions ZL, Rath MK, Alves VM, Causey K, Rua D, Muratov EN, Tropsha A. Beasley JT, et al. Among authors: korn dr. Regul Toxicol Pharmacol. 2022 Dec;136:105277. doi: 10.1016/j.yrtph.2022.105277. Epub 2022 Oct 23. Regul Toxicol Pharmacol. 2022. PMID: 36288772
STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity.
Borba JVB, Alves VM, Braga RC, Korn DR, Overdahl K, Silva AC, Hall SUS, Overdahl E, Kleinstreuer N, Strickland J, Allen D, Andrade CH, Muratov EN, Tropsha A. Borba JVB, et al. Among authors: korn dr. Environ Health Perspect. 2022 Feb;130(2):27012. doi: 10.1289/EHP9341. Epub 2022 Feb 22. Environ Health Perspect. 2022. PMID: 35192406 Free PMC article.