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Page 1
Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans.
Parker E, Omah IF, Varilly P, Magee A, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Tomkins-Tinch CH, Otieno JR, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, Djuicy DD, Essengue LLM, Yifomnjou MHM, Zeller M, Gangavarapu K, O'Toole Á, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Njoum R, Ihekweazu C, Jide I, Adetifa I, Happi CT. Parker E, et al. Among authors: lemey p. medRxiv [Preprint]. 2024 Jun 19:2024.06.18.24309104. doi: 10.1101/2024.06.18.24309104. medRxiv. 2024. PMID: 38947052 Free PMC article. Preprint.
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2.
Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Robertson DL, Dellicour S, Worobey M, Wertheim JO, Lemey P. Pekar JE, et al. Among authors: lemey p. bioRxiv [Preprint]. 2023 Jul 12:2023.07.12.548617. doi: 10.1101/2023.07.12.548617. bioRxiv. 2023. PMID: 37502985 Free PMC article. Preprint.
Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic.
Crits-Christoph A, Levy JI, Pekar JE, Goldstein SA, Singh R, Hensel Z, Gangavarapu K, Rogers MB, Moshiri N, Garry RF, Holmes EC, Koopmans MPG, Lemey P, Popescu S, Rambaut A, Robertson DL, Suchard MA, Wertheim JO, Rasmussen AL, Andersen KG, Worobey M, Débarre F. Crits-Christoph A, et al. Among authors: lemey p. bioRxiv [Preprint]. 2023 Sep 14:2023.09.13.557637. doi: 10.1101/2023.09.13.557637. bioRxiv. 2023. Update in: Cell. 2024 Sep 19;187(19):5468-5482.e11. doi: 10.1016/j.cell.2024.08.010 PMID: 37745602 Free PMC article. Updated. Preprint.
Data integration in Bayesian phylogenetics.
Hassler GW, Magee A, Zhang Z, Baele G, Lemey P, Ji X, Fourment M, Suchard MA. Hassler GW, et al. Among authors: lemey p. Annu Rev Stat Appl. 2023;10:353-377. doi: 10.1146/annurev-statistics-033021-112532. Epub 2022 Sep 28. Annu Rev Stat Appl. 2023. PMID: 38774036 Free PMC article.
Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa.
Djuicy DD, Omah IF, Parker E, Tomkins-Tinch CH, Otieno JR, Yifomnjou MHM, Essengue LLM, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Yonga MGW, Essima GD, Touoyem IP, Mounchili LJM, Eyangoh SI, Esso L, Nguidjol IME, Metomb SF, Chebo C, Agwe SM, Mossi HM, Bilounga CN, Etoundi AGM, Akanbi O, Egwuenu A, Ehiakhamen O, Chukwu C, Suleiman K, Akinpelu A, Ahmad A, Imam KI, Ojedele R, Oripenaye V, Ikeata K, Adelakun S, Olajumoke B, O'Toole Á, Magee A, Zeller M, Gangavarapu K, Varilly P, Park DJ, Mboowa G, Tessema SK, Tebeje YK, Folarin O, Happi A, Lemey P, Suchard MA, Andersen KG, Sabeti P, Rambaut A, Ihekweazu C, Jide I, Adetifa I, Njoum R, Happi CT. Djuicy DD, et al. Among authors: lemey p. medRxiv [Preprint]. 2024 Jun 19:2024.06.18.24309115. doi: 10.1101/2024.06.18.24309115. medRxiv. 2024. PMID: 38947021 Free PMC article. Preprint.
Modeling the velocity of evolving lineages and predicting dispersal patterns.
Bastide P, Rocu P, Wirtz J, Hassler GW, Chevenet F, Fargette D, Suchard MA, Dellicour S, Lemey P, Guindon S. Bastide P, et al. Among authors: lemey p. bioRxiv [Preprint]. 2024 Oct 28:2024.06.06.597755. doi: 10.1101/2024.06.06.597755. bioRxiv. 2024. Update in: Proc Natl Acad Sci U S A. 2024 Nov 19;121(47):e2411582121. doi: 10.1073/pnas.2411582121 PMID: 38895258 Free PMC article. Updated. Preprint.
The genetic diversity of Nipah virus across spatial scales.
Azuero OC, Lefrancq N, Nikolay B, McKee C, Cappelle J, Hul V, Ou TP, Hoem T, Lemey P, Rahman MZ, Islam A, Gurley ES, Duong V, Salje H. Azuero OC, et al. Among authors: lemey p. medRxiv [Preprint]. 2023 Oct 4:2023.07.14.23292668. doi: 10.1101/2023.07.14.23292668. medRxiv. 2023. Update in: J Infect Dis. 2024 Dec 16;230(6):e1235-e1244. doi: 10.1093/infdis/jiae221 PMID: 37502973 Free PMC article. Updated. Preprint.
Report 46: Factors driving extensive spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals.
Brizzi A, Whittaker C, Servo LMS, Hawryluk I, Prete CA Jr, de Souza WM, Aguiar RS, Araujo LJT, Bastos LS, Blenkinsop A, Buss LF, Candido D, Castro MC, Costa SF, Croda J, de Souza Santos AA, Dye C, Flaxman S, Fonseca PLC, Geddes VEV, Gutierrez B, Lemey P, Levin AS, Mellan T, Bonfim DM, Miscouridou X, Mishra S, Monod M, Moreira FRR, Nelson B, Pereira RHM, Ranzani O, Schnekenberg RP, Semenova E, Sonnabend R, Souza RP, Xi X, Sabino EC, Faria NR, Bhatt S, Ratmann O. Brizzi A, et al. Among authors: lemey p. medRxiv [Preprint]. 2021 Nov 2:2021.11.01.21265731. doi: 10.1101/2021.11.01.21265731. medRxiv. 2021. Update in: Nat Med. 2022 Jul;28(7):1476-1485. doi: 10.1038/s41591-022-01807-1 PMID: 34751273 Free PMC article. Updated. Preprint.
372 results