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Multi-sample non-negative spatial factorization.
Wang Y, Woyshner K, Sriworarat C, Stein-O'Brie G, Goff LA, Hansen KD. Wang Y, et al. Among authors: goff la. bioRxiv [Preprint]. 2024 Jul 1:2024.07.01.599554. doi: 10.1101/2024.07.01.599554. bioRxiv. 2024. PMID: 39005356 Free PMC article. Preprint.
Enter the Matrix: Factorization Uncovers Knowledge from Omics.
Stein-O'Brien GL, Arora R, Culhane AC, Favorov AV, Garmire LX, Greene CS, Goff LA, Li Y, Ngom A, Ochs MF, Xu Y, Fertig EJ. Stein-O'Brien GL, et al. Among authors: goff la. Trends Genet. 2018 Oct;34(10):790-805. doi: 10.1016/j.tig.2018.07.003. Epub 2018 Aug 22. Trends Genet. 2018. PMID: 30143323 Free PMC article. Review.
Universal prediction of cell-cycle position using transfer learning.
Zheng SC, Stein-O'Brien G, Augustin JJ, Slosberg J, Carosso GA, Winer B, Shin G, Bjornsson HT, Goff LA, Hansen KD. Zheng SC, et al. Among authors: goff la. Genome Biol. 2022 Jan 31;23(1):41. doi: 10.1186/s13059-021-02581-y. Genome Biol. 2022. PMID: 35101061 Free PMC article.
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS.
Johnson JAI, Tsang AP, Mitchell JT, Zhou DL, Bowden J, Davis-Marcisak E, Sherman T, Liefeld T, Loth M, Goff LA, Zimmerman JW, Kinny-Köster B, Jaffee EM, Tamayo P, Mesirov JP, Reich M, Fertig EJ, Stein-O'Brien GL. Johnson JAI, et al. Among authors: goff la. Nat Protoc. 2023 Dec;18(12):3690-3731. doi: 10.1038/s41596-023-00892-x. Epub 2023 Nov 21. Nat Protoc. 2023. PMID: 37989764 Free PMC article. Review.
A consensus definition for deep layer 6 excitatory neurons in mouse neocortex.
Kim SJ, Babola TA, Lee K, Matney CJ, Spiegel AC, Liew MH, Schulteis EM, Coye AE, Proskurin M, Kang H, Kim JA, Chevée M, Lee K, Kanold PO, Goff LA, Kim J, Brown SP. Kim SJ, et al. Among authors: goff la. bioRxiv [Preprint]. 2024 Nov 5:2024.11.04.621933. doi: 10.1101/2024.11.04.621933. bioRxiv. 2024. PMID: 39574572 Free PMC article. Preprint.
73 results