Okumura H - Search Results

1

Why Is Arginine the Only Amino Acid That Inhibits Polyglutamine Monomers from Taking on Toxic Conformations?

Tanimoto S, Okumura H. Tanimoto S, et al. Among authors: okumura h. ACS Chem Neurosci. 2024 Aug 7;15(15):2925-2935. doi: 10.1021/acschemneuro.4c00276. Epub 2024 Jul 15. ACS Chem Neurosci. 2024. PMID: 39009034 Free PMC article.

2

Dynamic properties of SARS-CoV and SARS-CoV-2 RNA-dependent RNA polymerases studied by molecular dynamics simulations.

Itoh SG, Tanimoto S, Okumura H. Itoh SG, et al. Among authors: okumura h. Chem Phys Lett. 2021 Sep;778:138819. doi: 10.1016/j.cplett.2021.138819. Epub 2021 Jun 10. Chem Phys Lett. 2021. PMID: 34127868 Free PMC article.

3

"Bucket brigade" using lysine residues in RNA-dependent RNA polymerase of SARS-CoV-2.

Tanimoto S, Itoh SG, Okumura H. Tanimoto S, et al. Among authors: okumura h. Biophys J. 2021 Sep 7;120(17):3615-3627. doi: 10.1016/j.bpj.2021.07.026. Epub 2021 Jul 31. Biophys J. 2021. PMID: 34339634 Free PMC article.

4

State-of-the-Art Molecular Dynamics Simulation Studies of RNA-Dependent RNA Polymerase of SARS-CoV-2.

Tanimoto S, Itoh SG, Okumura H. Tanimoto S, et al. Among authors: okumura h. Int J Mol Sci. 2022 Sep 8;23(18):10358. doi: 10.3390/ijms231810358. Int J Mol Sci. 2022. PMID: 36142270 Free PMC article. Review.

5

Key Residue for Aggregation of Amyloid-β Peptides.

Itoh SG, Yagi-Utsumi M, Kato K, Okumura H. Itoh SG, et al. Among authors: okumura h. ACS Chem Neurosci. 2022 Nov 16;13(22):3139-3151. doi: 10.1021/acschemneuro.2c00358. Epub 2022 Oct 27. ACS Chem Neurosci. 2022. PMID: 36302506 Free PMC article.

6

The Double-Layered Structure of Amyloid-β Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization.

Yagi-Utsumi M, Itoh SG, Okumura H, Yanagisawa K, Kato K, Nishimura K. Yagi-Utsumi M, et al. Among authors: okumura h. ACS Chem Neurosci. 2023 Aug 2;14(15):2648-2657. doi: 10.1021/acschemneuro.3c00192. Epub 2023 Jul 23. ACS Chem Neurosci. 2023. PMID: 37482658 Free PMC article.

7

Amyloid fibril disruption by ultrasonic cavitation: nonequilibrium molecular dynamics simulations.

Okumura H, Itoh SG. Okumura H, et al. J Am Chem Soc. 2014 Jul 30;136(30):10549-52. doi: 10.1021/ja502749f. Epub 2014 Jul 9. J Am Chem Soc. 2014. PMID: 24987794

8

Oligomer Formation of Amyloid-β(29-42) from Its Monomers Using the Hamiltonian Replica-Permutation Molecular Dynamics Simulation.

Itoh SG, Okumura H. Itoh SG, et al. Among authors: okumura h. J Phys Chem B. 2016 Jul 14;120(27):6555-61. doi: 10.1021/acs.jpcb.6b03828. Epub 2016 Jun 24. J Phys Chem B. 2016. PMID: 27281682

9

Development of isothermal-isobaric replica-permutation method for molecular dynamics and Monte Carlo simulations and its application to reveal temperature and pressure dependence of folded, misfolded, and unfolded states of chignolin.

Yamauchi M, Okumura H. Yamauchi M, et al. Among authors: okumura h. J Chem Phys. 2017 Nov 14;147(18):184107. doi: 10.1063/1.4996431. J Chem Phys. 2017. PMID: 29141431

10

Conformational properties of an artificial GM1 glycan cluster based on a metal-ligand complex.

Tachi Y, Okamoto Y, Okumura H. Tachi Y, et al. Among authors: okumura h. J Chem Phys. 2018 Oct 7;149(13):135101. doi: 10.1063/1.5045310. J Chem Phys. 2018. PMID: 30292198

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