Xiao X - Search Results

1

Lymphatic-localized Treg-mregDC crosstalk limits antigen trafficking and restrains anti-tumor immunity.

You S, Li S, Zeng L, Song J, Li Z, Li W, Ni H, Xiao X, Deng W, Li H, Lin W, Liang C, Zheng Y, Cheng SC, Xiao N, Tong M, Yu R, Huang J, Huang H, Xu H, Han J, Ren J, Mao K. You S, et al. Among authors: xiao n, xiao x. Cancer Cell. 2024 Aug 12;42(8):1415-1433.e12. doi: 10.1016/j.ccell.2024.06.014. Epub 2024 Jul 18. Cancer Cell. 2024. PMID: 39029466

2

Comparison of high-throughput single-cell RNA sequencing data processing pipelines.

Gao M, Ling M, Tang X, Wang S, Xiao X, Qiao Y, Yang W, Yu R. Gao M, et al. Among authors: xiao x. Brief Bioinform. 2021 May 20;22(3):bbaa116. doi: 10.1093/bib/bbaa116. Brief Bioinform. 2021. PMID: 34020539

3

Inconsistent prediction capability of ImmuneCells.Sig across different RNA-seq datasets.

Xiao X, Xu C, Yang W, Yu R. Xiao X, et al. Nat Commun. 2021 Jul 7;12(1):4167. doi: 10.1038/s41467-021-24303-5. Nat Commun. 2021. PMID: 34234113 Free PMC article. No abstract available.

4

Dice-XMBD: Deep Learning-Based Cell Segmentation for Imaging Mass Cytometry.

Xiao X, Qiao Y, Jiao Y, Fu N, Yang W, Wang L, Yu R, Han J. Xiao X, et al. Front Genet. 2021 Sep 15;12:721229. doi: 10.3389/fgene.2021.721229. eCollection 2021. Front Genet. 2021. PMID: 34603385 Free PMC article.

5

DAISM-DNN^XMBD: Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks.

Lin Y, Li H, Xiao X, Zhang L, Wang K, Zhao J, Wang M, Zheng F, Zhang M, Yang W, Han J, Yu R. Lin Y, et al. Among authors: xiao x. Patterns (N Y). 2022 Feb 3;3(3):100440. doi: 10.1016/j.patter.2022.100440. eCollection 2022 Mar 11. Patterns (N Y). 2022. PMID: 35510186 Free PMC article.

6

Protocol to estimate cell type proportions from bulk RNA-seq using DAISM-DNN^XMBD.

Lin Y, Wu S, Xiao X, Zhao J, Wang M, Li H, Wang K, Zhang M, Zheng F, Yang W, Zhang L, Han J, Yu R. Lin Y, et al. Among authors: xiao x. STAR Protoc. 2022 Jul 31;3(3):101587. doi: 10.1016/j.xpro.2022.101587. eCollection 2022 Sep 16. STAR Protoc. 2022. PMID: 35942344 Free PMC article.

7

Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma.

Xiao X, Guo Q, Cui C, Lin Y, Zhang L, Ding X, Li Q, Wang M, Yang W, Kong Y, Yu R. Xiao X, et al. Commun Med (Lond). 2022 Oct 21;2:131. doi: 10.1038/s43856-022-00197-2. eCollection 2022. Commun Med (Lond). 2022. PMID: 36281356 Free PMC article.

8

Opioid-induced fragile-like regulatory T cells contribute to withdrawal.

Zhu Y, Yan P, Wang R, Lai J, Tang H, Xiao X, Yu R, Bao X, Zhu F, Wang K, Lu Y, Dang J, Zhu C, Zhang R, Dang W, Zhang B, Fu Q, Zhang Q, Kang C, Chen Y, Chen X, Liang Q, Wang K. Zhu Y, et al. Among authors: xiao x. Cell. 2023 Feb 2;186(3):591-606.e23. doi: 10.1016/j.cell.2022.12.030. Epub 2023 Jan 19. Cell. 2023. PMID: 36669483 Free article.

9

Community assessment of methods to deconvolve cellular composition from bulk gene expression.

White BS, de Reyniès A, Newman AM, Waterfall JJ, Lamb A, Petitprez F, Lin Y, Yu R, Guerrero-Gimenez ME, Domanskyi S, Monaco G, Chung V, Banerjee J, Derrick D, Valdeolivas A, Li H, Xiao X, Wang S, Zheng F, Yang W, Catania CA, Lang BJ, Bertus TJ, Piermarocchi C, Caruso FP, Ceccarelli M, Yu T, Guo X, Bletz J, Coller J, Maecker H, Duault C, Shokoohi V, Patel S, Liliental JE, Simon S; Tumor Deconvolution DREAM Challenge consortium; Saez-Rodriguez J, Heiser LM, Guinney J, Gentles AJ. White BS, et al. Among authors: xiao x. Nat Commun. 2024 Aug 27;15(1):7362. doi: 10.1038/s41467-024-50618-0. Nat Commun. 2024. PMID: 39191725 Free PMC article.

10

Author Correction: Community assessment of methods to deconvolve cellular composition from bulk gene expression.

White BS, de Reyniès A, Newman AM, Waterfall JJ, Lamb A, Petitprez F, Lin Y, Yu R, Guerrero-Gimenez ME, Domanskyi S, Monaco G, Chung V, Banerjee J, Derrick D, Valdeolivas A, Li H, Xiao X, Wang S, Zheng F, Yang W, Catania CA, Lang BJ, Bertus TJ, Piermarocchi C, Caruso FP, Ceccarelli M, Yu T, Guo X, Bletz J, Coller J, Maecker H, Duault C, Shokoohi V, Patel S, Liliental JE, Simon S; Tumor Deconvolution DREAM Challenge consortium; Saez-Rodriguez J, Heiser LM, Guinney J, Gentles AJ. White BS, et al. Among authors: xiao x. Nat Commun. 2024 Nov 12;15(1):9783. doi: 10.1038/s41467-024-53843-9. Nat Commun. 2024. PMID: 39532851 Free PMC article. No abstract available.

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