Shivashankar GV - Search Results

1

Unsupervised representation learning of chromatin images identifies changes in cell state and tissue organization in DCIS.

Zhang X, Venkatachalapathy S, Paysan D, Schaerer P, Tripodo C, Uhler C, Shivashankar GV. Zhang X, et al. Among authors: shivashankar gv. Nat Commun. 2024 Jul 20;15(1):6112. doi: 10.1038/s41467-024-50285-1. Nat Commun. 2024. PMID: 39030176 Free PMC article.

2

Nuclear Mechanopathology and Cancer Diagnosis.

Uhler C, Shivashankar GV. Uhler C, et al. Among authors: shivashankar gv. Trends Cancer. 2018 Apr;4(4):320-331. doi: 10.1016/j.trecan.2018.02.009. Epub 2018 Mar 16. Trends Cancer. 2018. PMID: 29606315 Review.

3

Predicting cell lineages using autoencoders and optimal transport.

Yang KD, Damodaran K, Venkatachalapathy S, Soylemezoglu AC, Shivashankar GV, Uhler C. Yang KD, et al. Among authors: shivashankar gv. PLoS Comput Biol. 2020 Apr 28;16(4):e1007828. doi: 10.1371/journal.pcbi.1007828. eCollection 2020 Apr. PLoS Comput Biol. 2020. PMID: 32343706 Free PMC article.

4

Multi-domain translation between single-cell imaging and sequencing data using autoencoders.

Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, Shivashankar GV, Uhler C. Yang KD, et al. Among authors: shivashankar gv. Nat Commun. 2021 Jan 4;12(1):31. doi: 10.1038/s41467-020-20249-2. Nat Commun. 2021. PMID: 33397893 Free PMC article.

5

Single cell imaging-based chromatin biomarkers for tumor progression.

Venkatachalapathy S, Jokhun DS, Andhari M, Shivashankar GV. Venkatachalapathy S, et al. Among authors: shivashankar gv. Sci Rep. 2021 Nov 29;11(1):23041. doi: 10.1038/s41598-021-02441-6. Sci Rep. 2021. PMID: 34845273 Free PMC article.

6

Regulation of genome organization and gene expression by nuclear mechanotransduction.

Uhler C, Shivashankar GV. Uhler C, et al. Among authors: shivashankar gv. Nat Rev Mol Cell Biol. 2017 Dec;18(12):717-727. doi: 10.1038/nrm.2017.101. Epub 2017 Oct 18. Nat Rev Mol Cell Biol. 2017. PMID: 29044247 Review.

7

Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription.

Belyaeva A, Venkatachalapathy S, Nagarajan M, Shivashankar GV, Uhler C. Belyaeva A, et al. Among authors: shivashankar gv. Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):13714-13719. doi: 10.1073/pnas.1708028115. Epub 2017 Dec 11. Proc Natl Acad Sci U S A. 2017. PMID: 29229825 Free PMC article.

8

Machine Learning for Nuclear Mechano-Morphometric Biomarkers in Cancer Diagnosis.

Radhakrishnan A, Damodaran K, Soylemezoglu AC, Uhler C, Shivashankar GV. Radhakrishnan A, et al. Among authors: shivashankar gv. Sci Rep. 2017 Dec 20;7(1):17946. doi: 10.1038/s41598-017-17858-1. Sci Rep. 2017. PMID: 29263424 Free PMC article.

9

Multivariate analysis reveals activation-primed fibroblast geometric states in engineered 3D tumor microenvironments.

Venkatachalapathy S, Jokhun DS, Shivashankar GV. Venkatachalapathy S, et al. Among authors: shivashankar gv. Mol Biol Cell. 2020 Apr 1;31(8):803-812. doi: 10.1091/mbc.E19-08-0420. Epub 2020 Feb 5. Mol Biol Cell. 2020. PMID: 32023167 Free PMC article.

10

Causal network models of SARS-CoV-2 expression and aging to identify candidates for drug repurposing.

Belyaeva A, Cammarata L, Radhakrishnan A, Squires C, Yang KD, Shivashankar GV, Uhler C. Belyaeva A, et al. Among authors: shivashankar gv. Nat Commun. 2021 Feb 15;12(1):1024. doi: 10.1038/s41467-021-21056-z. Nat Commun. 2021. PMID: 33589624 Free PMC article.

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