Bonnici V - Search Results

1

Seven quick tips for gene-focused computational pangenomic analysis.

Bonnici V, Chicco D. Bonnici V, et al. BioData Min. 2024 Sep 3;17(1):28. doi: 10.1186/s13040-024-00380-2. BioData Min. 2024. PMID: 39227987 Free PMC article.

2

DiGAS: Differential gene allele spectrum as a descriptor in genetic studies.

Aparo A, Bonnici V, Avesani S, Cascione L, Giugno R; Alzheimer’s Disease Neuroimaging Initiative. Aparo A, et al. Among authors: bonnici v. Comput Biol Med. 2024 Sep;179:108924. doi: 10.1016/j.compbiomed.2024.108924. Epub 2024 Jul 26. Comput Biol Med. 2024. PMID: 39067286 Free article.

3

PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies.

Bonnici V, Mengoni C, Mangoni M, Franco G, Giugno R. Bonnici V, et al. J Biomed Inform. 2023 Dec;148:104552. doi: 10.1016/j.jbi.2023.104552. Epub 2023 Nov 22. J Biomed Inform. 2023. PMID: 37995844 Free article.

4

Author Correction: Informational laws of genome structures.

Bonnici V, Manca V. Bonnici V, et al. Sci Rep. 2023 Feb 28;13(1):3422. doi: 10.1038/s41598-023-30108-x. Sci Rep. 2023. PMID: 36854792 Free PMC article. No abstract available.

5

Stardust: improving spatial transcriptomics data analysis through space-aware modularity optimization-based clustering.

Avesani S, Viesi E, Alessandrì L, Motterle G, Bonnici V, Beccuti M, Calogero R, Giugno R. Avesani S, et al. Among authors: bonnici v. Gigascience. 2022 Aug 10;11:giac075. doi: 10.1093/gigascience/giac075. Gigascience. 2022. PMID: 35946989 Free PMC article.

6

Covid19/IT the digital side of Covid19: A picture from Italy with clustering and taxonomy.

Bonnici V, Cicceri G, Distefano S, Galletta L, Polignano M, Scaffidi C. Bonnici V, et al. PLoS One. 2022 Jun 9;17(6):e0269687. doi: 10.1371/journal.pone.0269687. eCollection 2022. PLoS One. 2022. PMID: 35679235 Free PMC article.

7

PANPROVA: pangenomic prokaryotic evolution of full assemblies.

Bonnici V, Giugno R. Bonnici V, et al. Bioinformatics. 2022 Apr 28;38(9):2631-2632. doi: 10.1093/bioinformatics/btac158. Bioinformatics. 2022. PMID: 35289871

8

TEDAR: Temporal dynamic signal detection of adverse reactions.

Aparo A, Sala P, Bonnici V, Giugno R. Aparo A, et al. Among authors: bonnici v. Artif Intell Med. 2021 Dec;122:102212. doi: 10.1016/j.artmed.2021.102212. Epub 2021 Nov 12. Artif Intell Med. 2021. PMID: 34823837

9

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.

Tognon M, Bonnici V, Garrison E, Giugno R, Pinello L. Tognon M, et al. Among authors: bonnici v. PLoS Comput Biol. 2021 Sep 27;17(9):e1009444. doi: 10.1371/journal.pcbi.1009444. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34570769 Free PMC article.

10

GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases.

Licheri N, Bonnici V, Beccuti M, Giugno R. Licheri N, et al. Among authors: bonnici v. BMC Bioinformatics. 2021 Apr 22;22(1):209. doi: 10.1186/s12859-021-04129-0. BMC Bioinformatics. 2021. PMID: 33888059 Free PMC article.

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