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349 results

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Page 1
Sfaira accelerates data and model reuse in single cell genomics.
Fischer DS, Dony L, König M, Moeed A, Zappia L, Heumos L, Tritschler S, Holmberg O, Aliee H, Theis FJ. Fischer DS, et al. Among authors: theis fj. Genome Biol. 2021 Aug 25;22(1):248. doi: 10.1186/s13059-021-02452-6. Genome Biol. 2021. PMID: 34433466 Free PMC article.
Squidpy: a scalable framework for spatial omics analysis.
Palla G, Spitzer H, Klein M, Fischer D, Schaar AC, Kuemmerle LB, Rybakov S, Ibarra IL, Holmberg O, Virshup I, Lotfollahi M, Richter S, Theis FJ. Palla G, et al. Among authors: theis fj. Nat Methods. 2022 Feb;19(2):171-178. doi: 10.1038/s41592-021-01358-2. Epub 2022 Jan 31. Nat Methods. 2022. PMID: 35102346 Free PMC article.
Best practices for single-cell analysis across modalities.
Heumos L, Schaar AC, Lance C, Litinetskaya A, Drost F, Zappia L, Lücken MD, Strobl DC, Henao J, Curion F; Single-cell Best Practices Consortium; Schiller HB, Theis FJ. Heumos L, et al. Among authors: theis fj. Nat Rev Genet. 2023 Aug;24(8):550-572. doi: 10.1038/s41576-023-00586-w. Epub 2023 Mar 31. Nat Rev Genet. 2023. PMID: 37002403 Free PMC article. Review.
Reconstructing disease dynamics for mechanistic insights and clinical benefit.
Frishberg A, Milman N, Alpert A, Spitzer H, Asani B, Schiefelbein JB, Bakin E, Regev-Berman K, Priglinger SG, Schultze JL, Theis FJ, Shen-Orr SS. Frishberg A, et al. Among authors: theis fj. Nat Commun. 2023 Oct 27;14(1):6840. doi: 10.1038/s41467-023-42354-8. Nat Commun. 2023. PMID: 37891175 Free PMC article.
Mature neutrophils and a NF-κB-to-IFN transition determine the unifying disease recovery dynamics in COVID-19.
Frishberg A, Kooistra E, Nuesch-Germano M, Pecht T, Milman N, Reusch N, Warnat-Herresthal S, Bruse N, Händler K, Theis H, Kraut M, van Rijssen E, van Cranenbroek B, Koenen HJ, Heesakkers H, van den Boogaard M, Zegers M, Pickkers P, Becker M, Aschenbrenner AC, Ulas T, Theis FJ, Shen-Orr SS, Schultze JL, Kox M. Frishberg A, et al. Among authors: theis h, theis fj. Cell Rep Med. 2022 Jun 21;3(6):100652. doi: 10.1016/j.xcrm.2022.100652. Epub 2022 May 17. Cell Rep Med. 2022. PMID: 35675822 Free PMC article.
Metabolism gene signatures and surgical site infections in abdominal surgery.
Kong B, Bruns P, Raulefs S, Rieder S, Paul L, Prazeresda Costa O, Buch T, Theis FJ, Michalski CW, Kleeff J. Kong B, et al. Among authors: theis fj. Int J Surg. 2015 Feb;14:67-74. doi: 10.1016/j.ijsu.2015.01.009. Epub 2015 Jan 16. Int J Surg. 2015. PMID: 25599917 Free article.
349 results