Searle B - Search Results

1

Rapid assay development for low input targeted proteomics using a versatile linear ion trap.

Searle B, Shannon A, Teodorescu R, Song NJ, Heil L, Jacob C, Remes P, Li Z, Rubinstein M. Searle B, et al. Res Sq [Preprint]. 2024 Jul 19:rs.3.rs-4702746. doi: 10.21203/rs.3.rs-4702746/v1. Res Sq. 2024. PMID: 39070662 Free PMC article. Preprint.

2

Scribe: Next Generation Library Searching for DDA Experiments.

Searle BC, Shannon AE, Wilburn DB. Searle BC, et al. J Proteome Res. 2023 Feb 3;22(2):482-490. doi: 10.1021/acs.jproteome.2c00672. Epub 2023 Jan 25. J Proteome Res. 2023. PMID: 36695531

3

Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition.

Heil LR, Damoc E, Arrey TN, Pashkova A, Denisov E, Petzoldt J, Peterson AC, Hsu C, Searle BC, Shulman N, Riffle M, Connolly B, MacLean BX, Remes PM, Senko MW, Stewart HI, Hock C, Makarov AA, Hermanson D, Zabrouskov V, Wu CC, MacCoss MJ. Heil LR, et al. Among authors: searle bc. J Proteome Res. 2023 Oct 6;22(10):3290-3300. doi: 10.1021/acs.jproteome.3c00357. Epub 2023 Sep 8. J Proteome Res. 2023. PMID: 37683181 Free PMC article.

4

A workflow for targeted proteomics assay development using a versatile linear ion trap.

Shannon AE, Teodorescu RN, Soon N, Heil LR, Jacob CC, Remes PM, Rubinstein MP, Searle BC. Shannon AE, et al. Among authors: searle bc. bioRxiv [Preprint]. 2024 Jun 1:2024.05.31.596891. doi: 10.1101/2024.05.31.596891. bioRxiv. 2024. PMID: 38853838 Free PMC article. Preprint.

5

Data acquisition approaches for single cell proteomics.

Ghosh G, Shannon AE, Searle BC. Ghosh G, et al. Among authors: searle bc. Proteomics. 2024 Aug 1:e2400022. doi: 10.1002/pmic.202400022. Online ahead of print. Proteomics. 2024. PMID: 39088833 Review.

6

Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications.

Wilburn DB, Shannon AE, Spicer V, Richards AL, Yeung D, Swaney DL, Krokhin OV, Searle BC. Wilburn DB, et al. bioRxiv [Preprint]. 2023 Jun 2:2023.05.30.542978. doi: 10.1101/2023.05.30.542978. bioRxiv. 2023. PMID: 37398395 Free PMC article. Preprint.

7

Optimizing linear ion trap data independent acquisition towards single cell proteomics.

Phlairaharn T, Ye Z, Krismer E, Pedersen AK, Pietzner M, Olsen JV, Schoof EM, Searle BC. Phlairaharn T, et al. bioRxiv [Preprint]. 2023 Feb 21:2023.02.21.529444. doi: 10.1101/2023.02.21.529444. bioRxiv. 2023. Update in: Anal Chem. 2023 Jul 4;95(26):9881-9891. doi: 10.1021/acs.analchem.3c00842 PMID: 36865114 Free PMC article. Updated. Preprint.

8

Optimizing Linear Ion-Trap Data-Independent Acquisition toward Single-Cell Proteomics.

Phlairaharn T, Ye Z, Krismer E, Pedersen AK, Pietzner M, Olsen JV, Schoof EM, Searle BC. Phlairaharn T, et al. Anal Chem. 2023 Jul 4;95(26):9881-9891. doi: 10.1021/acs.analchem.3c00842. Epub 2023 Jun 20. Anal Chem. 2023. PMID: 37338819

9

High Sensitivity Limited Material Proteomics Empowered by Data-Independent Acquisition on Linear Ion Traps.

Phlairaharn T, Grégoire S, Woltereck LR, Petrosius V, Furtwängler B, Searle BC, Schoof EM. Phlairaharn T, et al. Among authors: searle bc. J Proteome Res. 2022 Nov 4;21(11):2815-2826. doi: 10.1021/acs.jproteome.2c00376. Epub 2022 Oct 26. J Proteome Res. 2022. PMID: 36287219

10

Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics.

Pino LK, Searle BC, Yang HY, Hoofnagle AN, Noble WS, MacCoss MJ. Pino LK, et al. J Proteome Res. 2020 Mar 6;19(3):1147-1153. doi: 10.1021/acs.jproteome.9b00666. Epub 2020 Feb 24. J Proteome Res. 2020. PMID: 32037841 Free PMC article.

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