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Page 1
Spatial dynamics of mammalian brain development and neuroinflammation by multimodal tri-omics mapping.
Zhang D, Rubio Rodríguez-Kirby LA, Lin Y, Song M, Wang L, Wang L, Kanatani S, Jimenez-Beristain T, Dang Y, Zhong M, Kukanja P, Wang S, Chen XL, Gao F, Wang D, Xu H, Lou X, Liu Y, Chen J, Sestan N, Uhlén P, Kriegstein A, Zhao H, Castelo-Branco G, Fan R. Zhang D, et al. Among authors: fan r. bioRxiv [Preprint]. 2024 Jul 28:2024.07.28.605493. doi: 10.1101/2024.07.28.605493. bioRxiv. 2024. PMID: 39091821 Free PMC article. Preprint.
Spatial profiling of chromatin accessibility in mouse and human tissues.
Deng Y, Bartosovic M, Ma S, Zhang D, Kukanja P, Xiao Y, Su G, Liu Y, Qin X, Rosoklija GB, Dwork AJ, Mann JJ, Xu ML, Halene S, Craft JE, Leong KW, Boldrini M, Castelo-Branco G, Fan R. Deng Y, et al. Among authors: fan r. Nature. 2022 Sep;609(7926):375-383. doi: 10.1038/s41586-022-05094-1. Epub 2022 Aug 17. Nature. 2022. PMID: 35978191 Free PMC article.
Spatial epigenome-transcriptome co-profiling of mammalian tissues.
Zhang D, Deng Y, Kukanja P, Agirre E, Bartosovic M, Dong M, Ma C, Ma S, Su G, Bao S, Liu Y, Xiao Y, Rosoklija GB, Dwork AJ, Mann JJ, Leong KW, Boldrini M, Wang L, Haeussler M, Raphael BJ, Kluger Y, Castelo-Branco G, Fan R. Zhang D, et al. Among authors: fan r. Nature. 2023 Apr;616(7955):113-122. doi: 10.1038/s41586-023-05795-1. Epub 2023 Mar 15. Nature. 2023. PMID: 36922587 Free PMC article.
Deciphering spatial domains from spatial multi-omics with SpatialGlue.
Long Y, Ang KS, Sethi R, Liao S, Heng Y, van Olst L, Ye S, Zhong C, Xu H, Zhang D, Kwok I, Husna N, Jian M, Ng LG, Chen A, Gascoigne NRJ, Gate D, Fan R, Xu X, Chen J. Long Y, et al. Among authors: fan r. Nat Methods. 2024 Sep;21(9):1658-1667. doi: 10.1038/s41592-024-02316-4. Epub 2024 Jun 21. Nat Methods. 2024. PMID: 38907114 Free PMC article.
Spatial dynamics of mammalian brain development and neuroinflammation by multimodal tri-omics mapping.
Fan R, Zhang D, Rodríguez-Kirby L, Lin Y, Song M, Wang L, Wang L, Kanatani S, Jimenez-Beristain T, Dang Y, Zhong M, Kukanja P, Wang S, Chen X, Gao F, Wang D, Xu H, Lou X, Liu Y, Chen J, Sestan N, Uhlen P, Kriegstein AR, Zhao H, Castelo-Branco G. Fan R, et al. Res Sq [Preprint]. 2024 Aug 12:rs.3.rs-4814866. doi: 10.21203/rs.3.rs-4814866/v1. Res Sq. 2024. PMID: 39184075 Free PMC article. Preprint.
Mapping intratumoral myeloid-T cell interactomes at single-cell resolution reveals targets for overcoming checkpoint inhibitor resistance.
Bridges K, Pizzurro GA, Baysoy A, Baskaran JP, Xu Z, Mathew V, Tripple V, LaPorte M, Park K, Damsky W, Kluger H, Fan R, Kaech SM, Bosenberg MW, Miller-Jensen K. Bridges K, et al. Among authors: fan r. bioRxiv [Preprint]. 2024 Oct 31:2024.10.28.620093. doi: 10.1101/2024.10.28.620093. bioRxiv. 2024. PMID: 39554094 Free PMC article. Preprint.
Spatially Resolved in vivo CRISPR Screen Sequencing via Perturb-DBiT.
Baysoy A, Tian X, Zhang F, Renauer P, Bai Z, Shi H, Li H, Tao B, Yang M, Enninful A, Gao F, Wang G, Zhang W, Tran T, Patterson NH, Bao S, Dong C, Xin S, Zhong M, Rankin S, Guy C, Wang Y, Connelly JP, Pruett-Miller SM, Chi H, Chen S, Fan R. Baysoy A, et al. Among authors: fan r. bioRxiv [Preprint]. 2024 Nov 19:2024.11.18.624106. doi: 10.1101/2024.11.18.624106. bioRxiv. 2024. PMID: 39605490 Free PMC article. Preprint.
Spatial multi-omics sequencing for fixed tissue via DBiT-seq.
Su G, Qin X, Enninful A, Bai Z, Deng Y, Liu Y, Fan R. Su G, et al. Among authors: fan r. STAR Protoc. 2021 May 11;2(2):100532. doi: 10.1016/j.xpro.2021.100532. eCollection 2021 Jun 18. STAR Protoc. 2021. PMID: 34027489 Free PMC article.
3,473 results