Shimada A - Search Results

1

Resonance Raman spectral analysis of the heme site structure of cytochrome c oxidase with its positive regulator CHCHD2.

Yanagisawa S, Kamei T, Shimada A, Gladyck S, Aras S, Hüttemann M, Grossman LI, Kubo M. Yanagisawa S, et al. Among authors: shimada a. J Inorg Biochem. 2024 Nov;260:112673. doi: 10.1016/j.jinorgbio.2024.112673. Epub 2024 Jul 25. J Inorg Biochem. 2024. PMID: 39094247

2

A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.

Shimada A, Kubo M, Baba S, Yamashita K, Hirata K, Ueno G, Nomura T, Kimura T, Shinzawa-Itoh K, Baba J, Hatano K, Eto Y, Miyamoto A, Murakami H, Kumasaka T, Owada S, Tono K, Yabashi M, Yamaguchi Y, Yanagisawa S, Sakaguchi M, Ogura T, Komiya R, Yan J, Yamashita E, Yamamoto M, Ago H, Yoshikawa S, Tsukihara T. Shimada A, et al. Sci Adv. 2017 Jul 14;3(7):e1603042. doi: 10.1126/sciadv.1603042. eCollection 2017 Jul. Sci Adv. 2017. PMID: 28740863 Free PMC article.

3

Recent progress in experimental studies on the catalytic mechanism of cytochrome c oxidase.

Shimada A, Tsukihara T, Yoshikawa S. Shimada A, et al. Front Chem. 2023 May 4;11:1108190. doi: 10.3389/fchem.2023.1108190. eCollection 2023. Front Chem. 2023. PMID: 37214485 Free PMC article. Review.

4

Respiratory conservation of energy with dioxygen: cytochrome C oxidase.

Yoshikawa S, Shimada A, Shinzawa-Itoh K. Yoshikawa S, et al. Among authors: shimada a. Met Ions Life Sci. 2015;15:89-130. doi: 10.1007/978-3-319-12415-5_4. Met Ions Life Sci. 2015. PMID: 25707467 Free article. Review.

5

Critical roles of the Cu_B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates.

Shimada A, Hara F, Shinzawa-Itoh K, Kanehisa N, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S. Shimada A, et al. J Biol Chem. 2021 Sep;297(3):100967. doi: 10.1016/j.jbc.2021.100967. Epub 2021 Jul 15. J Biol Chem. 2021. PMID: 34274318 Free PMC article.

6

Crystallographic cyanide-probing for cytochrome c oxidase reveals structural bases suggesting that a putative proton transfer H-pathway pumps protons.

Shimada A, Baba J, Nagao S, Shinzawa-Itoh K, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S. Shimada A, et al. J Biol Chem. 2023 Nov;299(11):105277. doi: 10.1016/j.jbc.2023.105277. Epub 2023 Sep 22. J Biol Chem. 2023. PMID: 37742916 Free PMC article.

7

X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O₂ activation and unidirectional proton-pump mechanisms.

Shimada A, Etoh Y, Kitoh-Fujisawa R, Sasaki A, Shinzawa-Itoh K, Hiromoto T, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S. Shimada A, et al. J Biol Chem. 2020 Apr 24;295(17):5818-5833. doi: 10.1074/jbc.RA119.009596. Epub 2020 Mar 12. J Biol Chem. 2020. PMID: 32165497 Free PMC article.

8

Complex structure of cytochrome c-cytochrome c oxidase reveals a novel protein-protein interaction mode.

Shimada S, Shinzawa-Itoh K, Baba J, Aoe S, Shimada A, Yamashita E, Kang J, Tateno M, Yoshikawa S, Tsukihara T. Shimada S, et al. Among authors: shimada a. EMBO J. 2017 Feb 1;36(3):291-300. doi: 10.15252/embj.201695021. Epub 2016 Dec 15. EMBO J. 2017. PMID: 27979921 Free PMC article.

9

The Mg2+-containing Water Cluster of Mammalian Cytochrome c Oxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle.

Yano N, Muramoto K, Shimada A, Takemura S, Baba J, Fujisawa H, Mochizuki M, Shinzawa-Itoh K, Yamashita E, Tsukihara T, Yoshikawa S. Yano N, et al. Among authors: shimada a. J Biol Chem. 2016 Nov 11;291(46):23882-23894. doi: 10.1074/jbc.M115.711770. Epub 2016 Sep 7. J Biol Chem. 2016. PMID: 27605664 Free PMC article.

10

Structure of bovine cytochrome c oxidase crystallized at a neutral pH using a fluorinated detergent.

Luo F, Shinzawa-Itoh K, Hagimoto K, Shimada A, Shimada S, Yamashita E, Yoshikawa S, Tsukihara T. Luo F, et al. Among authors: shimada s, shimada a. Acta Crystallogr F Struct Biol Commun. 2017 Jul 1;73(Pt 7):416-422. doi: 10.1107/S2053230X17008834. Epub 2017 Jun 20. Acta Crystallogr F Struct Biol Commun. 2017. PMID: 28695851 Free PMC article.

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