Theis FJ - Search Results

1

scTab: Scaling cross-tissue single-cell annotation models.

Fischer F, Fischer DS, Mukhin R, Isaev A, Biederstedt E, Villani AC, Theis FJ. Fischer F, et al. Among authors: theis fj. Nat Commun. 2024 Aug 4;15(1):6611. doi: 10.1038/s41467-024-51059-5. Nat Commun. 2024. PMID: 39098889 Free PMC article.

2

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.

Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. Buettner F, et al. Among authors: theis fj. Nat Biotechnol. 2015 Feb;33(2):155-60. doi: 10.1038/nbt.3102. Epub 2015 Jan 19. Nat Biotechnol. 2015. PMID: 25599176

3

Label-free cell cycle analysis for high-throughput imaging flow cytometry.

Blasi T, Hennig H, Summers HD, Theis FJ, Cerveira J, Patterson JO, Davies D, Filby A, Carpenter AE, Rees P. Blasi T, et al. Among authors: theis fj. Nat Commun. 2016 Jan 7;7:10256. doi: 10.1038/ncomms10256. Nat Commun. 2016. PMID: 26739115 Free PMC article.

4

Model-based branching point detection in single-cell data by K-branches clustering.

Chlis NK, Wolf FA, Theis FJ. Chlis NK, et al. Among authors: theis fj. Bioinformatics. 2017 Oct 15;33(20):3211-3219. doi: 10.1093/bioinformatics/btx325. Bioinformatics. 2017. PMID: 28582478 Free PMC article.

5

Reconstructing cell cycle and disease progression using deep learning.

Eulenberg P, Köhler N, Blasi T, Filby A, Carpenter AE, Rees P, Theis FJ, Wolf FA. Eulenberg P, et al. Among authors: theis fj. Nat Commun. 2017 Sep 6;8(1):463. doi: 10.1038/s41467-017-00623-3. Nat Commun. 2017. PMID: 28878212 Free PMC article.

6

Network inference from glycoproteomics data reveals new reactions in the IgG glycosylation pathway.

Benedetti E, Pučić-Baković M, Keser T, Wahl A, Hassinen A, Yang JY, Liu L, Trbojević-Akmačić I, Razdorov G, Štambuk J, Klarić L, Ugrina I, Selman MHJ, Wuhrer M, Rudan I, Polasek O, Hayward C, Grallert H, Strauch K, Peters A, Meitinger T, Gieger C, Vilaj M, Boons GJ, Moremen KW, Ovchinnikova T, Bovin N, Kellokumpu S, Theis FJ, Lauc G, Krumsiek J. Benedetti E, et al. Among authors: theis fj. Nat Commun. 2017 Nov 14;8(1):1483. doi: 10.1038/s41467-017-01525-0. Nat Commun. 2017. PMID: 29133956 Free PMC article.

7

Impulse model-based differential expression analysis of time course sequencing data.

Fischer DS, Theis FJ, Yosef N. Fischer DS, et al. Among authors: theis fj. Nucleic Acids Res. 2018 Nov 16;46(20):e119. doi: 10.1093/nar/gky675. Nucleic Acids Res. 2018. PMID: 30102402 Free PMC article.

8

A test metric for assessing single-cell RNA-seq batch correction.

Büttner M, Miao Z, Wolf FA, Teichmann SA, Theis FJ. Büttner M, et al. Among authors: theis fj. Nat Methods. 2019 Jan;16(1):43-49. doi: 10.1038/s41592-018-0254-1. Epub 2018 Dec 20. Nat Methods. 2019. PMID: 30573817

9

Single-cell RNA-seq denoising using a deep count autoencoder.

Eraslan G, Simon LM, Mircea M, Mueller NS, Theis FJ. Eraslan G, et al. Among authors: theis fj. Nat Commun. 2019 Jan 23;10(1):390. doi: 10.1038/s41467-018-07931-2. Nat Commun. 2019. PMID: 30674886 Free PMC article.

10

An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics.

Angelidis I, Simon LM, Fernandez IE, Strunz M, Mayr CH, Greiffo FR, Tsitsiridis G, Ansari M, Graf E, Strom TM, Nagendran M, Desai T, Eickelberg O, Mann M, Theis FJ, Schiller HB. Angelidis I, et al. Among authors: theis fj. Nat Commun. 2019 Feb 27;10(1):963. doi: 10.1038/s41467-019-08831-9. Nat Commun. 2019. PMID: 30814501 Free PMC article.

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