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High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436.
Wang B, Chougule K, Jiao Y, Olson A, Kumar V, Gladman N, Huang J, Llaca V, Fengler K, Wei X, Wang L, Wang X, Regulski M, Drenkow J, Gingeras T, Hayes C, Armstrong JS, Huang Y, Xin Z, Ware D. Wang B, et al. Among authors: wang x, wang l. NAR Genom Bioinform. 2024 Aug 9;6(3):lqae097. doi: 10.1093/nargab/lqae097. eCollection 2024 Sep. NAR Genom Bioinform. 2024. PMID: 39131819 Free PMC article.
Improved RNA-seq Workflows Using CyVerse Cyberinfrastructure.
Chougule KM, Wang L, Stein JC, Wang X, Devisetty UK, Klein RR, Ware D. Chougule KM, et al. Among authors: wang x, wang l. Curr Protoc Bioinformatics. 2018 Sep;63(1):e53. doi: 10.1002/cpbi.53. Epub 2018 Aug 31. Curr Protoc Bioinformatics. 2018. PMID: 30168903
Double triage to identify poorly annotated genes in maize: The missing link in community curation.
Tello-Ruiz MK, Marco CF, Hsu FM, Khangura RS, Qiao P, Sapkota S, Stitzer MC, Wasikowski R, Wu H, Zhan J, Chougule K, Barone LC, Ghiban C, Muna D, Olson AC, Wang L, Ware D, Micklos DA. Tello-Ruiz MK, et al. Among authors: wang l. PLoS One. 2019 Oct 28;14(10):e0224086. doi: 10.1371/journal.pone.0224086. eCollection 2019. PLoS One. 2019. PMID: 31658277 Free PMC article.
Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud.
Wang L, Lu Z, delaBastide M, Van Buren P, Wang X, Ghiban C, Regulski M, Drenkow J, Xu X, Ortiz-Ramirez C, Marco CF, Goodwin S, Dobin A, Birnbaum KD, Jackson DP, Martienssen RA, McCombie WR, Micklos DA, Schatz MC, Ware DH, Gingeras TR. Wang L, et al. Among authors: wang x. Front Plant Sci. 2020 Mar 31;11:289. doi: 10.3389/fpls.2020.00289. eCollection 2020. Front Plant Sci. 2020. PMID: 32296450 Free PMC article.
Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery.
Xu X, Crow M, Rice BR, Li F, Harris B, Liu L, Demesa-Arevalo E, Lu Z, Wang L, Fox N, Wang X, Drenkow J, Luo A, Char SN, Yang B, Sylvester AW, Gingeras TR, Schmitz RJ, Ware D, Lipka AE, Gillis J, Jackson D. Xu X, et al. Among authors: wang x, wang l. Dev Cell. 2021 Feb 22;56(4):557-568.e6. doi: 10.1016/j.devcel.2020.12.015. Epub 2021 Jan 4. Dev Cell. 2021. PMID: 33400914 Free PMC article.
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