Davis JH - Search Results

1

An asymmetric nautilus-like HflK/C assembly controls FtsH proteolysis of membrane proteins.

Ghanbarpour A, Telusma B, Powell BM, Zhang JJ, Bolstad I, Vargas C, Keller S, Baker T, Sauer RT, Davis JH. Ghanbarpour A, et al. Among authors: davis jh. bioRxiv [Preprint]. 2024 Aug 10:2024.08.09.604662. doi: 10.1101/2024.08.09.604662. bioRxiv. 2024. PMID: 39149393 Free PMC article. Preprint.

2

Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN.

Kinman LF, Powell BM, Zhong ED, Berger B, Davis JH. Kinman LF, et al. Among authors: davis jh. Nat Protoc. 2023 Feb;18(2):319-339. doi: 10.1038/s41596-022-00763-x. Epub 2022 Nov 14. Nat Protoc. 2023. PMID: 36376590 Free PMC article. Review.

3

The SspB adaptor drives structural changes in the AAA+ ClpXP protease during ssrA-tagged substrate delivery.

Ghanbarpour A, Fei X, Baker TA, Davis JH, Sauer RT. Ghanbarpour A, et al. Among authors: davis jh. Proc Natl Acad Sci U S A. 2023 Feb 7;120(6):e2219044120. doi: 10.1073/pnas.2219044120. Epub 2023 Feb 2. Proc Natl Acad Sci U S A. 2023. PMID: 36730206 Free PMC article.

4

Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN.

Powell BM, Davis JH. Powell BM, et al. Among authors: davis jh. bioRxiv [Preprint]. 2023 Jun 2:2023.05.31.542975. doi: 10.1101/2023.05.31.542975. bioRxiv. 2023. Update in: Nat Methods. 2024 Aug;21(8):1525-1536. doi: 10.1038/s41592-024-02210-z PMID: 37398315 Free PMC article. Updated. Preprint.

5

A closed translocation channel in the substrate-free AAA+ ClpXP protease diminishes rogue degradation.

Ghanbarpour A, Cohen SE, Fei X, Kinman LF, Bell TA, Zhang JJ, Baker TA, Davis JH, Sauer RT. Ghanbarpour A, et al. Among authors: davis jh. Nat Commun. 2023 Nov 10;14(1):7281. doi: 10.1038/s41467-023-43145-x. Nat Commun. 2023. PMID: 37949857 Free PMC article.

6

A proteolytic AAA+ machine poised to unfold a protein substrate.

Ghanbarpour A, Sauer RT, Davis JH. Ghanbarpour A, et al. Among authors: davis jh. bioRxiv [Preprint]. 2023 Dec 15:2023.12.14.571662. doi: 10.1101/2023.12.14.571662. bioRxiv. 2023. Update in: Nat Commun. 2024 Nov 8;15(1):9681. doi: 10.1038/s41467-024-53681-9 PMID: 38168193 Free PMC article. Updated. Preprint.

7

Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN.

Powell BM, Davis JH. Powell BM, et al. Among authors: davis jh. Nat Methods. 2024 Aug;21(8):1525-1536. doi: 10.1038/s41592-024-02210-z. Epub 2024 Mar 8. Nat Methods. 2024. PMID: 38459385 Free PMC article.

8

Rapid structural analysis of bacterial ribosomes in situ.

Powell BM, Brant TS, Davis JH, Mosalaganti S. Powell BM, et al. Among authors: davis jh. bioRxiv [Preprint]. 2024 Mar 26:2024.03.22.586148. doi: 10.1101/2024.03.22.586148. bioRxiv. 2024. PMID: 38585831 Free PMC article. Preprint.

9

Bulk and selective autophagy cooperate to remodel a fungal proteome in response to changing nutrient availability.

Telusma B, Farre JC, Cui DS, Subramani S, Davis JH. Telusma B, et al. Among authors: davis jh. bioRxiv [Preprint]. 2024 Sep 26:2024.09.24.614842. doi: 10.1101/2024.09.24.614842. bioRxiv. 2024. PMID: 39386609 Free PMC article. Preprint.

10

Automated model-free analysis of cryo-EM volume ensembles with SIREn.

Kinman LF, Carreira MV, Powell BM, Davis JH. Kinman LF, et al. Among authors: davis jh. bioRxiv [Preprint]. 2024 Oct 8:2024.10.08.617123. doi: 10.1101/2024.10.08.617123. bioRxiv. 2024. PMID: 39415986 Free PMC article. Preprint.

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