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Genetic-epigenetic interplay in the determination of plant 3D genome organization.
He X, Dias Lopes C, Pereyra-Bistrain LI, Huang Y, An J, Chaouche RB, Zalzalé H, Wang Q, Ma X, Antunez-Sanchez J, Bergounioux C, Piquerez S, Fragkostefanakis S, Zhang Y, Zheng S, Crespi M, Mahfouz MM, Mathieu O, Ariel F, Gutierrez-Marcos J, Li X, Bouché N, Raynaud C, Latrasse D, Benhamed M. He X, et al. Among authors: ariel f. Nucleic Acids Res. 2024 Sep 23;52(17):10220-10234. doi: 10.1093/nar/gkae690. Nucleic Acids Res. 2024. PMID: 39149894 Free PMC article.
Put your 3D glasses on: plant chromatin is on show.
Rodriguez-Granados NY, Ramirez-Prado JS, Veluchamy A, Latrasse D, Raynaud C, Crespi M, Ariel F, Benhamed M. Rodriguez-Granados NY, et al. Among authors: ariel f. J Exp Bot. 2016 May;67(11):3205-21. doi: 10.1093/jxb/erw168. Epub 2016 Apr 29. J Exp Bot. 2016. PMID: 27129951 Review.
Splicing regulation by long noncoding RNAs.
Romero-Barrios N, Legascue MF, Benhamed M, Ariel F, Crespi M. Romero-Barrios N, et al. Among authors: ariel f. Nucleic Acids Res. 2018 Mar 16;46(5):2169-2184. doi: 10.1093/nar/gky095. Nucleic Acids Res. 2018. PMID: 29425321 Free PMC article. Review.
A new role for histone demethylases in the maintenance of plant genome integrity.
Antunez-Sanchez J, Naish M, Ramirez-Prado JS, Ohno S, Huang Y, Dawson A, Opassathian K, Manza-Mianza D, Ariel F, Raynaud C, Wibowo A, Daron J, Ueda M, Latrasse D, Slotkin RK, Weigel D, Benhamed M, Gutierrez-Marcos J. Antunez-Sanchez J, et al. Among authors: ariel f. Elife. 2020 Oct 27;9:e58533. doi: 10.7554/eLife.58533. Elife. 2020. PMID: 33107825 Free PMC article.
Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis.
Huang Y, Sicar S, Ramirez-Prado JS, Manza-Mianza D, Antunez-Sanchez J, Brik-Chaouche R, Rodriguez-Granados NY, An J, Bergounioux C, Mahfouz MM, Hirt H, Crespi M, Concia L, Barneche F, Amiard S, Probst AV, Gutierrez-Marcos J, Ariel F, Raynaud C, Latrasse D, Benhamed M. Huang Y, et al. Among authors: ariel f. Genome Res. 2021 Jul;31(7):1230-1244. doi: 10.1101/gr.273771.120. Epub 2021 Jun 3. Genome Res. 2021. PMID: 34083408 Free PMC article.
HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions.
Huang Y, An J, Sircar S, Bergis C, Lopes CD, He X, Da Costa B, Tan FQ, Bazin J, Antunez-Sanchez J, Mammarella MF, Devani RS, Brik-Chaouche R, Bendahmane A, Frugier F, Xia C, Rothan C, Probst AV, Mohamed Z, Bergounioux C, Delarue M, Zhang Y, Zheng S, Crespi M, Fragkostefanakis S, Mahfouz MM, Ariel F, Gutierrez-Marcos J, Raynaud C, Latrasse D, Benhamed M. Huang Y, et al. Among authors: ariel f. Nat Commun. 2023 Jan 28;14(1):469. doi: 10.1038/s41467-023-36227-3. Nat Commun. 2023. PMID: 36709329 Free PMC article.
An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac distribution.
An J, Brik Chaouche R, Pereyra-Bistraín LI, Zalzalé H, Wang Q, Huang Y, He X, Dias Lopes C, Antunez-Sanchez J, Bergounioux C, Boulogne C, Dupas C, Gillet C, Pérez-Pérez JM, Mathieu O, Bouché N, Fragkostefanakis S, Zhang Y, Zheng S, Crespi M, Mahfouz MM, Ariel F, Gutierrez-Marcos J, Raynaud C, Latrasse D, Benhamed M. An J, et al. Among authors: ariel f. Proc Natl Acad Sci U S A. 2024 Jul 9;121(28):e2400737121. doi: 10.1073/pnas.2400737121. Epub 2024 Jul 5. Proc Natl Acad Sci U S A. 2024. PMID: 38968127 Free PMC article.
Non-B DNA in plant genomes: prediction, mapping, and emerging roles.
Ferrero L, Zhang W, Benhamed M, Crespi M, Ariel F. Ferrero L, et al. Among authors: ariel f. Trends Plant Sci. 2024 Nov;29(11):1224-1244. doi: 10.1016/j.tplants.2024.06.011. Epub 2024 Jul 29. Trends Plant Sci. 2024. PMID: 39079769 Review.
86 results