Robinson MD - Search Results

1

Benchmarking computational methods for single-cell chromatin data analysis.

Luo S, Germain PL, Robinson MD, von Meyenn F. Luo S, et al. Among authors: robinson md. Genome Biol. 2024 Aug 16;25(1):225. doi: 10.1186/s13059-024-03356-x. Genome Biol. 2024. PMID: 39152456 Free PMC article.

2

Copy-number-aware differential analysis of quantitative DNA sequencing data.

Robinson MD, Strbenac D, Stirzaker C, Statham AL, Song J, Speed TP, Clark SJ. Robinson MD, et al. Genome Res. 2012 Dec;22(12):2489-96. doi: 10.1101/gr.139055.112. Epub 2012 Aug 9. Genome Res. 2012. PMID: 22879430 Free PMC article.

3

edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology.

Nikolayeva O, Robinson MD. Nikolayeva O, et al. Among authors: robinson md. Methods Mol Biol. 2014;1150:45-79. doi: 10.1007/978-1-4939-0512-6_3. Methods Mol Biol. 2014. PMID: 24743990

4

Do count-based differential expression methods perform poorly when genes are expressed in only one condition?

Zhou X, Robinson MD. Zhou X, et al. Among authors: robinson md. Genome Biol. 2015 Oct 8;16:222. doi: 10.1186/s13059-015-0781-3. Genome Biol. 2015. PMID: 26450178 Free PMC article.

5

Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage.

Soneson C, Matthes KL, Nowicka M, Law CW, Robinson MD. Soneson C, et al. Among authors: robinson md. Genome Biol. 2016 Jan 26;17:12. doi: 10.1186/s13059-015-0862-3. Genome Biol. 2016. PMID: 26813113 Free PMC article.

6

Comparison of clustering methods for high-dimensional single-cell flow and mass cytometry data.

Weber LM, Robinson MD. Weber LM, et al. Among authors: robinson md. Cytometry A. 2016 Dec;89(12):1084-1096. doi: 10.1002/cyto.a.23030. Epub 2016 Dec 19. Cytometry A. 2016. PMID: 27992111 Free article.

7

stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage.

Van den Berge K, Soneson C, Robinson MD, Clement L. Van den Berge K, et al. Among authors: robinson md. Genome Biol. 2017 Aug 7;18(1):151. doi: 10.1186/s13059-017-1277-0. Genome Biol. 2017. PMID: 28784146 Free PMC article.

8

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Van den Berge K, et al. Among authors: robinson md. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4. Genome Biol. 2018. PMID: 29478411 Free PMC article.

9

Bias, robustness and scalability in single-cell differential expression analysis.

Soneson C, Robinson MD. Soneson C, et al. Among authors: robinson md. Nat Methods. 2018 Apr;15(4):255-261. doi: 10.1038/nmeth.4612. Epub 2018 Feb 26. Nat Methods. 2018. PMID: 29481549

10

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering.

Weber LM, Nowicka M, Soneson C, Robinson MD. Weber LM, et al. Among authors: robinson md. Commun Biol. 2019 May 14;2:183. doi: 10.1038/s42003-019-0415-5. eCollection 2019. Commun Biol. 2019. PMID: 31098416 Free PMC article.

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