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Page 1
Graph databases in systems biology: a systematic review.
Mazein I, Rougny A, Mazein A, Henkel R, Gütebier L, Michaelis L, Ostaszewski M, Schneider R, Satagopam V, Jensen LJ, Waltemath D, Wodke JAH, Balaur I. Mazein I, et al. Among authors: balaur i. Brief Bioinform. 2024 Sep 23;25(6):bbae561. doi: 10.1093/bib/bbae561. Brief Bioinform. 2024. PMID: 39565895 Free PMC article.
Getting ready for the European Health Data Space (EHDS): IDERHA's plan to align with the latest EHDS requirements for the secondary use of health data.
Hussein R, Balaur I, Burmann A, Ćwiek-Kupczyńska H, Gadiya Y, Ghosh S, Jayathissa P, Katsch F, Kremer A, Lähteenmäki J, Meng Z, Morasek K, C Rancourt R, Satagopam V, Sauermann S, Scheider S, Stamm T, Muehlendyck C, Gribbon P. Hussein R, et al. Among authors: balaur i. Open Res Eur. 2024 Jul 30;4:160. doi: 10.12688/openreseurope.18179.1. eCollection 2024. Open Res Eur. 2024. PMID: 39185338 Free PMC article.
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, Hiroi NF, Hu F, Pham N, Ehrhart F, Willighagen EL, Valdeolivas A, Dugourd A, Messina F, Esteban-Medina M, Peña-Chilet M, Rian K, Soliman S, Aghamiri SS, Puniya BL, Naldi A, Helikar T, Singh V, Fernández MF, Bermudez V, Tsirvouli E, Montagud A, Noël V, Ponce-de-Leon M, Maier D, Bauch A, Gyori BM, Bachman JA, Luna A, Piñero J, Furlong LI, Balaur I, Rougny A, Jarosz Y, Overall RW, Phair R, Perfetto L, Matthews L, Rex DAB, Orlic-Milacic M, Gomez LCM, De Meulder B, Ravel JM, Jassal B, Satagopam V, Wu G, Golebiewski M, Gawron P, Calzone L, Beckmann JS, Evelo CT, D'Eustachio P, Schreiber F, Saez-Rodriguez J, Dopazo J, Kuiper M, Valencia A, Wolkenhauer O, Kitano H, Barillot E, Auffray C, Balling R, Schneider R; COVID-19 Disease Map Community. Niarakis A, et al. Among authors: balaur i. Front Immunol. 2024 Feb 13;14:1282859. doi: 10.3389/fimmu.2023.1282859. eCollection 2023. Front Immunol. 2024. PMID: 38414974 Free PMC article.
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.
Mazein A, Acencio ML, Balaur I, Rougny A, Welter D, Niarakis A, Ramirez Ardila D, Dogrusoz U, Gawron P, Satagopam V, Gu W, Kremer A, Schneider R, Ostaszewski M. Mazein A, et al. Among authors: balaur i. Front Bioinform. 2023 Jun 22;3:1197310. doi: 10.3389/fbinf.2023.1197310. eCollection 2023. Front Bioinform. 2023. PMID: 37426048 Free PMC article.
GraphML-SBGN bidirectional converter for metabolic networks.
Balaur I, Roy L, Touré V, Mazein A, Auffray C. Balaur I, et al. J Integr Bioinform. 2022 Dec 26;19(4):20220030. doi: 10.1515/jib-2022-0030. eCollection 2022 Dec 1. J Integr Bioinform. 2022. PMID: 36563404 Free PMC article.
CyFi-MAP: an interactive pathway-based resource for cystic fibrosis.
Pereira C, Mazein A, Farinha CM, Gray MA, Kunzelmann K, Ostaszewski M, Balaur I, Amaral MD, Falcao AO. Pereira C, et al. Among authors: balaur i. Sci Rep. 2021 Nov 15;11(1):22223. doi: 10.1038/s41598-021-01618-3. Sci Rep. 2021. PMID: 34782688 Free PMC article.
24 results